RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 STAT5BP51692 787 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 MRPS22P82650 360 aaKnown RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 KLF1Q13351 362 aaPredicted RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 MARK2Q7KZI7 788 aaKnown RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 RNF135Q8IUD6 432 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 CRYGNQ8WXF5 182 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 TRAPPC9Q96Q05 1148 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 KCNK16Q96T55 309 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 PRPF18Q99633 342 aaKnown RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 RNPEPQ9H4A4 650 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 C20orf96Q9NUD7 363 aaPredicted RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 SLC7A8Q9UHI5 535 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 A0A1B0GVG6 124 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 APOC4-APOC2K7ER74 178 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 NOL3O60936 208 aaKnown RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 APOC2P02655 101 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 CYP1A1P04798 512 aaPredicted RBP13.42□□□□□ -0.26
MSH6-210ENST00000540021 RPS6KA3P51812 740 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 OGDHQ02218 1023 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 TDRPQ86YL5 185 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 CERKQ8TCT0 537 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 DENND1AQ8TEH3 1009 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 SGF29Q96ES7 293 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 CAAP1Q9H8G2 361 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 WDR35Q9P2L0 1181 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 PLA2G4CQ9UP65 541 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 WDR46O15213 610 aaKnown RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 ZNF862O60290 1169 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 LRCH4O75427 683 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 TPD52P55327 224 aaPredicted RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 R3HDM1Q15032 1099 aaKnown RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 SLC39A4Q6P5W5 647 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 NET1Q7Z628 596 aaPredicted RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 DHDDSQ86SQ9 333 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 HPS6Q86YV9 775 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 EZH1Q92800 747 aaPredicted RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 DNAJC1Q96KC8 554 aaKnown RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 ARHGAP26Q9UNA1 814 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 COQ4Q9Y3A0 265 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 WDR27A2RRH5 827 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 A6NHS1 94 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 NELFEP18615 380 aaKnown RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 OCRLQ01968 901 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 AMHR2Q16671 573 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 PTPN20Q4JDL3 420 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 FAM47CQ5HY64 1035 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 KDELC2Q7Z4H8 507 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 CDKL3Q8IVW4 592 aaPredicted RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 FBXO27Q8NI29 283 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 APOL2Q9BQE5 337 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 PNPOQ9NVS9 261 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 FZD1Q9UP38 647 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 UBIAD1Q9Y5Z9 338 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 COMMD10Q9Y6G5 202 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 CAPN8A6NHC0 703 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 HNRNPRO43390 633 aaKnown RBP13.41□□□□□ -0.26
MSH6-210ENST00000540021 TBC1D12O60347 775 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 RALBP11234 206 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 PEX2P28328 305 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 POU5F1BQ06416 359 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 CDC16Q13042 620 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 LIN52Q52LA3 116 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 BBS12Q6ZW61 710 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 THAP1Q9NVV9 213 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 NR2E3Q9Y5X4 410 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 DOCK2Q92608 1830 aa13.41□□□□□ -0.26
MSH6-210ENST00000540021 APOEP02649 317 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 OATP04181 439 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 RARBP10826 455 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 PMLP29590 882 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 USP4Q13107 963 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 NME3Q13232 169 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 ACAP1Q15027 740 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 VPS72Q15906 364 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 ACAD11Q709F0 780 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 TREML1Q86YW5 311 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 IGDCC3Q8IVU1 814 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 TNS4Q8IZW8 715 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 ANKLE1Q8NAG6 615 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 PIWIL2Q8TC59 973 aaKnown RBP13.4□□□□□ -0.26
MSH6-210ENST00000540021 FAM172AQ8WUF8 416 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 SLC44A1Q8WWI5 657 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 ZNF669Q96BR6 464 aaPredicted RBP13.4□□□□□ -0.26
MSH6-210ENST00000540021 COPS7BQ9H9Q2 264 aaPredicted RBP13.4□□□□□ -0.26
MSH6-210ENST00000540021 SNCAIPQ9Y6H5 919 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 RPS6KL1Q9Y6S9 549 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 DCAF8L1A6NGE4 600 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 SPDYE2BA6NHP3 402 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 BHMG1C9JSJ3 638 aaPredicted RBP13.4□□□□□ -0.26
MSH6-210ENST00000540021 TM7SF2O76062 418 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 SPDYE6P0CI01 402 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 CXCL8P10145 99 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 FGFR1P11362 822 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 PDK3Q15120 406 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 ANKRD20A4Q4UJ75 823 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 ZC3H12AQ5D1E8 599 aaKnown RBP13.4□□□□□ -0.26
MSH6-210ENST00000540021 ZSCAN18Q8TBC5 510 aaPredicted RBP13.4□□□□□ -0.26
MSH6-210ENST00000540021 NRG4Q8WWG1 115 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 TFAP2BQ92481 460 aa13.4□□□□□ -0.26
MSH6-210ENST00000540021 EXT2Q93063 718 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms