RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 TMEM174Q8WUU8 243 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 PIGKQ92643 395 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 BHMTQ93088 406 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 HEXIM2Q96MH2 286 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 HNRNPABQ99729 332 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 EDEM2Q9BV94 578 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 NIF3L1Q9GZT8 377 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 SCAND2PQ9GZW5 306 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 CYP3A43Q9HB55 503 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 NMUR1Q9HB89 426 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 CSNK1G1Q9HCP0 422 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 DNAJC17Q9NVM6 304 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 LSM7Q9UK45 103 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 ATG2BQ96BY7 2078 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 CACNA1AO00555 2505 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 FAM92AA1XBS5 289 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 KHNYNO15037 678 aaKnown RBP13.71□□□□□ -0.21
CPSF1-204ENST00000529288 MAPK13O15264 365 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 KIR2DL1P43626 348 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-204ENST00000529288 LIMK1P53667 647 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 PREPLQ4J6C6 727 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-204ENST00000529288 C10orf120Q5SQS8 335 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 PMS2CLQ68D20 193 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 GRAMD4Q6IC98 578 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 TMEFF1Q8IYR6 380 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 GUF1Q8N442 669 aaKnown RBP13.71□□□□□ -0.21
CPSF1-204ENST00000529288 DEFB119Q8N690 84 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 FRMD1Q8N878 549 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 ZNF513Q8N8E2 541 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-204ENST00000529288 WHAMMQ8TF30 809 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 CCDC34Q96HJ3 373 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 SPACA7Q96KW9 195 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 BBS2Q9BXC9 721 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 KLF16Q9BXK1 252 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-204ENST00000529288 TMEM8AQ9HCN3 771 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 OSER1Q9NX31 292 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 NAGPAQ9UK23 515 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 SCML2Q9UQR0 700 aa13.71□□□□□ -0.21
CPSF1-204ENST00000529288 FAM237AA0A1B0GTK4 181 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 A0A1W2PQ27 194 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 A0A1W2PQ64 194 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 A0A1W2PQD8 194 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 C4orf47A7E2U8 309 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 PATE3B3GLJ2 98 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 ZBTB24O43167 697 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-204ENST00000529288 HOXC11O43248 304 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-204ENST00000529288 CILPO75339 1184 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 HMBSP08397 361 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 EPB41P11171 864 aaKnown RBP13.7□□□□□ -0.22
CPSF1-204ENST00000529288 INCA1Q0VD86 236 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 PPP1R26Q5T8A7 1209 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-204ENST00000529288 N4BP2L1Q5TBK1 243 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-204ENST00000529288 TCERG1LQ5VWI1 586 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 KRT39Q6A163 491 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 HTR3DQ70Z44 454 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 LPCAT2Q7L5N7 544 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 MIB1Q86YT6 1006 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 ETFBKMTQ8IXQ9 262 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 XPO6Q96QU8 1125 aaKnown RBP13.7□□□□□ -0.22
CPSF1-204ENST00000529288 RASAL2Q9UJF2 1139 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 DNMT3LQ9UJW3 386 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 PCDHA5Q9Y5H7 936 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 ANAPC1Q9H1A4 1944 aa13.7□□□□□ -0.22
CPSF1-204ENST00000529288 A0A0A0MRY4 1105 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 GOLGA6L4A6NEF3 574 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 HHLA1C9JL84 531 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 CETN3O15182 167 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 ADAM23O75077 832 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 RALAP11233 206 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 HOXB2P14652 356 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 TYRP14679 529 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 PLA2G4AP47712 749 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 MXI1P50539 228 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 PNOCQ13519 176 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 NFIL3Q16649 462 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 UAP1L1Q3KQV9 507 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 HSF5Q4G112 596 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-204ENST00000529288 DCAF17Q5H9S7 520 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-204ENST00000529288 SDE2Q6IQ49 451 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 TRMT11Q7Z4G4 463 aaKnown RBP13.69□□□□□ -0.22
CPSF1-204ENST00000529288 PHTF2Q8N3S3 785 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 TERB1Q8NA31 727 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 SEMA4DQ92854 862 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 DUSP16Q9BY84 665 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 CYLDQ9NQC7 956 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 PLK2Q9NYY3 685 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 WDR35Q9P2L0 1181 aa13.69□□□□□ -0.22
CPSF1-204ENST00000529288 GREB1Q4ZG55 1949 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 STX10O60499 249 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 NTSR1P30989 418 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 GTF2H1P32780 548 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 P2RY2P41231 377 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 KIF11P52732 1056 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 EFEMP1Q12805 493 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 BYSLQ13895 437 aaKnown RBP13.68□□□□□ -0.22
CPSF1-204ENST00000529288 DAB2IPQ5VWQ8 1189 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 EGFLAMQ63HQ2 1017 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 PSAPL1Q6NUJ1 521 aa13.68□□□□□ -0.22
CPSF1-204ENST00000529288 TOGARAM2Q6ZUX3 1019 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms