RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TKTL1P51854 596 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 CNGA2Q16280 664 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 BTBD8Q5XKL5 378 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 PM20D1Q6GTS8 502 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 RHBDF2Q6PJF5 856 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 SCD5Q86SK9 330 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 RBBP8NLQ8NC74 664 aaPredicted RBP21.67■■□□□ 1.06
VPS28-206ENST00000526734 KCTD13Q8WZ19 329 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 FBRSL1Q9HCM7 1045 aaKnown RBP21.67■■□□□ 1.06
VPS28-206ENST00000526734 LMBRD1Q9NUN5 540 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 CNTN6Q9UQ52 1028 aa21.67■■□□□ 1.06
VPS28-206ENST00000526734 MYO16Q9Y6X6 1858 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 IRF1P10914 325 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 ZNF132P52740 706 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 COG7P83436 770 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 MEA1Q16626 185 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 GAB4Q2WGN9 574 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 PKDCCQ504Y2 493 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 LONP2Q86WA8 852 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 ARHGEF19Q8IW93 802 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 BBS7Q8IWZ6 715 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 SUMF1Q8NBK3 374 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 MED15Q96RN5 788 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 PNKPQ96T60 521 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 SPHK2Q9NRA0 654 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 OLA1Q9NTK5 396 aaKnown RBP21.66■■□□□ 1.06
VPS28-206ENST00000526734 STRIP2Q9ULQ0 834 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.66■■□□□ 1.06
VPS28-206ENST00000526734 SLC8A2Q9UPR5 921 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 ZNF510Q9Y2H8 683 aa21.66■■□□□ 1.06
VPS28-206ENST00000526734 TBX18O95935 607 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 MTIF2P46199 727 aaKnown RBP21.65■■□□□ 1.06
VPS28-206ENST00000526734 MFAP3P55082 362 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 YWHAGP61981 247 aaKnown RBP eCLIP21.65■■□□□ 1.06
VPS28-206ENST00000526734 HSF5Q4G112 596 aaPredicted RBP21.65■■□□□ 1.06
VPS28-206ENST00000526734 LY6G5CQ5SRR4 150 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 GBP6Q6ZN66 633 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 RSRC2Q7L4I2 434 aaKnown RBP21.65■■□□□ 1.06
VPS28-206ENST00000526734 RRAGAQ7L523 313 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 SIX6OS1Q8N1H7 587 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 CAMKK1Q8N5S9 505 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 RUBCNQ92622 972 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 KAT5Q92993 513 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 SECISBP2LQ93073 1101 aaKnown RBP21.65■■□□□ 1.06
VPS28-206ENST00000526734 IPO9Q96P70 1041 aaKnown RBP21.65■■□□□ 1.06
VPS28-206ENST00000526734 DCLK3Q9C098 648 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 CNGB3Q9NQW8 809 aa21.65■■□□□ 1.06
VPS28-206ENST00000526734 APODP05090 189 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 DPCR1Q3MIW9 517 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 NAIF1Q69YI7 327 aaPredicted RBP21.64■■□□□ 1.05
VPS28-206ENST00000526734 TRIM65Q6PJ69 517 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 NUDT18Q6ZVK8 323 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 SYT13Q7L8C5 426 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 WDR5BQ86VZ2 330 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 IRF2BP1Q8IU81 584 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 ULBP1Q9BZM6 244 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 MARK1Q9P0L2 795 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 RAB23Q9ULC3 237 aa21.64■■□□□ 1.05
VPS28-206ENST00000526734 SMG5Q9UPR3 1016 aaKnown RBP21.64■■□□□ 1.05
VPS28-206ENST00000526734 M0QYV0 167 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 SCAMP3O14828 347 aaKnown RBP21.63■■□□□ 1.05
VPS28-206ENST00000526734 GREM1O60565 184 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 GRIA2P42262 883 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 MRPS21P82921 87 aaKnown RBP21.63■■□□□ 1.05
VPS28-206ENST00000526734 ADIGQ0VDE8 80 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 MAN2A1Q16706 1144 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 EXOC3L4Q17RC7 722 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 CREBRFQ8IUR6 639 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 ETFBKMTQ8IXQ9 262 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 RPLP0P6Q8NHW5 317 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 UBA3Q8TBC4 463 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 IRGQQ8WZA9 623 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 TFAP2BQ92481 460 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 EZH1Q92800 747 aaPredicted RBP21.63■■□□□ 1.05
VPS28-206ENST00000526734 HSFY1Q96LI6 401 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 KREMEN1Q96MU8 473 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 UBE2TQ9NPD8 197 aaPredicted RBP21.63■■□□□ 1.05
VPS28-206ENST00000526734 WDR35Q9P2L0 1181 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 RASAL2Q9UJF2 1139 aa21.63■■□□□ 1.05
VPS28-206ENST00000526734 A0A0A0MRY4 1105 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 RNF225M0QZC1 329 aaPredicted RBP21.62■■□□□ 1.05
VPS28-206ENST00000526734 MED7O43513 233 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 STC2O76061 302 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 KAT7O95251 611 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 BRD2P25440 801 aaKnown RBP21.62■■□□□ 1.05
VPS28-206ENST00000526734 FNTBP49356 437 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 PKN3Q6P5Z2 889 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 Q6ZNB5 142 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 MIB1Q86YT6 1006 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 USP33Q8TEY7 942 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 SLC35F5Q8WV83 523 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 ARHGEF4Q9NR80 690 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 MARCH2Q9P0N8 246 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 DEC1Q9P2X7 70 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 APEX2Q9UBZ4 518 aa21.62■■□□□ 1.05
VPS28-206ENST00000526734 FAM186AA6NE01 2351 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 RIF1Q5UIP0 2472 aaKnown RBP21.61■■□□□ 1.05
VPS28-206ENST00000526734 TULP2O00295 520 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 MDM4O15151 490 aa21.61■■□□□ 1.05
VPS28-206ENST00000526734 FBXO21O94952 628 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms