RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 TXNDC5Q8NBS9 432 aaKnown RBP23.83■■□□□ 1.41
PTPN4-211ENST00000488279 WBP2Q969T9 261 aa23.83■■□□□ 1.41
PTPN4-211ENST00000488279 KLF16Q9BXK1 252 aaPredicted RBP23.83■■□□□ 1.41
PTPN4-211ENST00000488279 DUSP15Q9H1R2 295 aaPredicted RBP23.83■■□□□ 1.41
PTPN4-211ENST00000488279 OSER1Q9NX31 292 aa23.83■■□□□ 1.41
PTPN4-211ENST00000488279 DEC1Q9P2X7 70 aa23.83■■□□□ 1.41
PTPN4-211ENST00000488279 HOOK1Q9UJC3 728 aaKnown RBP23.83■■□□□ 1.41
PTPN4-211ENST00000488279 LAMA1P25391 3075 aa23.83■■□□□ 1.41
PTPN4-211ENST00000488279 A0A1W2PQH9 124 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 TBC1D3BA6NDS4 549 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 ALDH1A2O94788 518 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 KLF8O95600 359 aaPredicted RBP23.82■■□□□ 1.4
PTPN4-211ENST00000488279 PSEN1P49768 467 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 KIF11P52732 1056 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 FKBP3Q00688 224 aaKnown RBP23.82■■□□□ 1.4
PTPN4-211ENST00000488279 KDSRQ06136 332 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 EMC10Q5UCC4 262 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 KLHDC10Q6PID8 442 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 C11orf74Q86VG3 221 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 RASSF3Q86WH2 238 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 ETFBKMTQ8IXQ9 262 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 IL17RCQ8NAC3 791 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 ENGASEQ8NFI3 743 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 TMEM176AQ96HP8 235 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 CNOT6LQ96LI5 555 aaKnown RBP23.82■■□□□ 1.4
PTPN4-211ENST00000488279 GTPBP4Q9BZE4 634 aaKnown RBP23.82■■□□□ 1.4
PTPN4-211ENST00000488279 NMUR1Q9HB89 426 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 CISHQ9NSE2 258 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 DNMT3LQ9UJW3 386 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 LSM7Q9UK45 103 aaKnown RBP23.82■■□□□ 1.4
PTPN4-211ENST00000488279 SDK1Q7Z5N4 2213 aa23.82■■□□□ 1.4
PTPN4-211ENST00000488279 TULP3O75386 442 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 RARGP13631 454 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 GBP1P32455 592 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 KIR2DL1P43626 348 aaPredicted RBP23.81■■□□□ 1.4
PTPN4-211ENST00000488279 PLA2G4AP47712 749 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 SF3A2Q15428 464 aaKnown RBP23.81■■□□□ 1.4
PTPN4-211ENST00000488279 EOGTQ5NDL2 527 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 PLA2G2CQ5R387 149 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 TCERG1LQ5VWI1 586 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 TMEM92Q6UXU6 159 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 TADA2BQ86TJ2 420 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 TTC30AQ86WT1 665 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 PHTF2Q8N3S3 785 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 KCNV2Q8TDN2 545 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 SMARCE1Q969G3 411 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 TPSD1Q9BZJ3 242 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 FAM124BQ9H5Z6 455 aaPredicted RBP23.81■■□□□ 1.4
PTPN4-211ENST00000488279 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.81■■□□□ 1.4
PTPN4-211ENST00000488279 NAGPAQ9UK23 515 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 INVSQ9Y283 1065 aa23.81■■□□□ 1.4
PTPN4-211ENST00000488279 SLC16A3O15427 465 aaKnown RBP23.8■■□□□ 1.4
PTPN4-211ENST00000488279 GREM1O60565 184 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 MPLP40238 635 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 DCAF17Q5H9S7 520 aaPredicted RBP23.8■■□□□ 1.4
PTPN4-211ENST00000488279 C10orf120Q5SQS8 335 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 ANKRD40Q6AI12 368 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 CCDC186Q7Z3E2 898 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 MDGA1Q8NFP4 955 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 SPATA20Q8TB22 786 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 TATDN2Q93075 761 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 TIGD1Q96MW7 591 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 POLMQ9NP87 494 aaPredicted RBP23.8■■□□□ 1.4
PTPN4-211ENST00000488279 VPS45Q9NRW7 570 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 USP3Q9Y6I4 520 aa23.8■■□□□ 1.4
PTPN4-211ENST00000488279 SGK1O00141 431 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 RALAP11233 206 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 RAD23BP54727 409 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 ZNF276Q8N554 614 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 SLC4A11Q8NBS3 891 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 XPO6Q96QU8 1125 aaKnown RBP23.79■■□□□ 1.4
PTPN4-211ENST00000488279 CDK5RAP1Q96SZ6 601 aaKnown RBP23.79■■□□□ 1.4
PTPN4-211ENST00000488279 UBXN6Q9BZV1 441 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 WDR35Q9P2L0 1181 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 NUDT5Q9UKK9 219 aa23.79■■□□□ 1.4
PTPN4-211ENST00000488279 CHRM1P11229 460 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-211ENST00000488279 LIMK1P53667 647 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 SLC8A3P57103 927 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 CREB5Q02930 508 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 LRRC63Q05C16 580 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 CBWD6Q4V339 395 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 CBWD3Q5JTY5 395 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 CBWD5Q5RIA9 395 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 TRMT11Q7Z4G4 463 aaKnown RBP23.78■■□□□ 1.4
PTPN4-211ENST00000488279 SCD5Q86SK9 330 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 ZC3H3Q8IXZ2 948 aaKnown RBP23.78■■□□□ 1.4
PTPN4-211ENST00000488279 DDX1Q92499 740 aaKnown RBP23.78■■□□□ 1.4
PTPN4-211ENST00000488279 ERCC4Q92889 916 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-211ENST00000488279 ARID3AQ99856 593 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 BBS2Q9BXC9 721 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 CLIC5Q9NZA1 410 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 ARMCX3Q9UH62 379 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-211ENST00000488279 COQ4Q9Y3A0 265 aa23.78■■□□□ 1.4
PTPN4-211ENST00000488279 MDM4O15151 490 aa23.77■■□□□ 1.4
PTPN4-211ENST00000488279 ADAM23O75077 832 aa23.77■■□□□ 1.4
PTPN4-211ENST00000488279 HNRNPLP14866 589 aaKnown RBP eCLIP23.77■■□□□ 1.4
PTPN4-211ENST00000488279 PMS1P54277 932 aaKnown RBP23.77■■□□□ 1.4
PTPN4-211ENST00000488279 ARHGAP17Q68EM7 881 aa23.77■■□□□ 1.4
PTPN4-211ENST00000488279 IL31Q6EBC2 164 aa23.77■■□□□ 1.4
PTPN4-211ENST00000488279 GRAMD4Q6IC98 578 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms