RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CRTAMO95727 393 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 IL1R2P27930 398 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 MRPS22P82650 360 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 SFSWAPQ12872 951 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 SNAPC2Q13487 334 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 PPP6R3Q5H9R7 873 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 B3GNT9Q6UX72 402 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 AMIGO2Q86SJ2 522 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 RTKN2Q8IZC4 609 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 GMCL1P1Q8NEA9 526 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 CSRNP1Q96S65 589 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 SF3B1O75533 1304 aaKnown RBP eCLIP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 CNTNAP4Q9C0A0 1308 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 SLC5A2P31639 672 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 HDAC4P56524 1084 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 SNRPFP62306 86 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PDK1Q15118 436 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PQLC1Q8N2U9 271 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 CCDC33Q8N5R6 958 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 EMC1Q8N766 993 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 SIKE1Q9BRV8 207 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 MAN1C1Q9NR34 630 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PNPOQ9NVS9 261 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PTPRJQ12913 1337 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 E2F8A0AVK6 867 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 BOLA2-SMG1P6H3BVE0 249 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 H7C0C1 242 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 ZC3H11AO75152 810 aaKnown RBP eCLIP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 ITGAXP20702 1163 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 CRKP46108 304 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 ATP5OP48047 213 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PIGHQ14442 188 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 TAF5Q15542 800 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 LRRC38Q5VT99 294 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PDPK2PQ6A1A2 396 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 PRR5LQ6MZQ0 368 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 RNF148Q8N7C7 305 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 AGR3Q8TD06 166 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 H0YIN7 160 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 H3BNX3 289 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 STAM2O75886 525 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 KRT38O76015 456 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 TNFAIP8O95379 198 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 NELFEP18615 380 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 RFC1P35251 1148 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 ANGEL2Q5VTE6 544 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 SCARA3Q6AZY7 606 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 SH3BP5LQ7L8J4 393 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 FBXW8Q8N3Y1 598 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 ACTRT2Q8TDY3 377 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 CDCA7Q9BWT1 371 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 COPS7BQ9H9Q2 264 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 SMYD2Q9NRG4 433 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 NUB1Q9Y5A7 615 aa19.45■□□□□ 0.7
CCDC88B-207ENST00000479965 APRTP07741 180 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 CSH1P0DML2 217 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 CSH2P0DML3 217 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 PIM1P11309 404 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 FUT4P22083 530 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 MYBPC1Q00872 1141 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 SEZ6Q53EL9 994 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 KLHL35Q6PF15 583 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 PHTF2Q8N3S3 785 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 ZNF778Q96MU6 729 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 SENP6Q9GZR1 1112 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 TTLL3Q9Y4R7 772 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 MYH9P35579 1960 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 ASTN2O75129 1339 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 A0A1B0GTW7 788 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 AIM2O14862 343 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 PEX1O43933 1283 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 SNNO75324 88 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 SLC1A6P48664 564 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 LIG4P49917 911 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 NLRP11P59045 1033 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 SP4Q02446 784 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 ZACNQ401N2 412 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 RARS2Q5T160 578 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 MARVELD2Q8N4S9 558 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 ACER1Q8TDN7 264 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 CMTM5Q96DZ9 223 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 ZFRQ96KR1 1074 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 MRPS26Q9BYN8 205 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 ST6GALNAC4Q9H4F1 302 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 TIMMDC1Q9NPL8 285 aa19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 MRPL11Q9Y3B7 192 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-207ENST00000479965 CALB1P05937 261 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 PGM2L1Q6PCE3 622 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 TRMT10BQ6PF06 316 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 TELO2Q9Y4R8 837 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 E9PBE3 544 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 XPO1O14980 1071 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 CFLARO15519 480 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 TBC1D12O60347 775 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 KLHL41O60662 606 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 VNN1O95497 513 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 EMP3P54852 163 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 TATDN1Q6P1N9 297 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 BBS12Q6ZW61 710 aa19.43■□□□□ 0.7
CCDC88B-207ENST00000479965 TMEM174Q8WUU8 243 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms