RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MDGA1Q8NFP4 955 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 CNOT6LQ96LI5 555 aaKnown RBP19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 TPSD1Q9BZJ3 242 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 SMOC1Q9H4F8 434 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 SPHK2Q9NRA0 654 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 RXFP3Q9NSD7 469 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 PCDHGA5Q9Y5G8 931 aa19.83■□□□□ 0.77
CCDC88B-206ENST00000473405 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 SGK1O00141 431 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 KLF8O95600 359 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 TRIM21P19474 475 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 TIE1P35590 1138 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 MPLP40238 635 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 GRIA2P42262 883 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 KIF11P52732 1056 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 COBLL1Q53SF7 1204 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 EMC10Q5UCC4 262 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 HTR3DQ70Z44 454 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 ZC3H3Q8IXZ2 948 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 TXNDC5Q8NBS9 432 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 CCDC150Q8NCX0 1101 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 FBXL13Q8NEE6 735 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 SPATA20Q8TB22 786 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 ZDHHC4Q9NPG8 344 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 CISHQ9NSE2 258 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 RMND1Q9NWS8 449 aa19.82■□□□□ 0.76
CCDC88B-206ENST00000473405 ASPMQ8IZT6 3477 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 USP24Q9UPU5 2620 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 A0A1W2PQH9 124 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 CETN3O15182 167 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 ADAM23O75077 832 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 TULP3O75386 442 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 EPB41P11171 864 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 TNFRSF4P43489 277 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 PMS1P54277 932 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 ELF2Q15723 593 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 AASDHQ4L235 1098 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 CBWD6Q4V339 395 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 ZNF394Q53GI3 561 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 CBWD3Q5JTY5 395 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 CBWD5Q5RIA9 395 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 ZNF658Q5TYW1 1059 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 SCD5Q86SK9 330 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 NAT16Q8N8M0 369 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 SLC4A11Q8NBS3 891 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 ERCC4Q92889 916 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 CCDC34Q96HJ3 373 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 FAXDC2Q96IV6 333 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 GSDMAQ96QA5 445 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 DUSP16Q9BY84 665 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 RAB20Q9NX57 234 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 INVSQ9Y283 1065 aa19.81■□□□□ 0.76
CCDC88B-206ENST00000473405 MDM4O15151 490 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 TRIM24O15164 1050 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 RARGP13631 454 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 BCKDHBP21953 392 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 ATP5C1P36542 298 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 RAD23BP54727 409 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 ANO4Q32M45 955 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 HSF5Q4G112 596 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 PMS2CLQ68D20 193 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 KLHDC10Q6PID8 442 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 CCDC186Q7Z3E2 898 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 TERB1Q8NA31 727 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 OLIG1Q8TAK6 271 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 NUDT5Q9UKK9 219 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 HCN2Q9UL51 889 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 USP3Q9Y6I4 520 aa19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 MAP1BP46821 2468 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-206ENST00000473405 WDFY3Q8IZQ1 3526 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 CEP192Q8TEP8 1941 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 SLC16A3O15427 465 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 STX10O60499 249 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 RHOBTB1O94844 696 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 LIMK1P53667 647 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 USP39Q53GS9 565 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 BTBD8Q5XKL5 378 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 ANKRD40Q6AI12 368 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 TCEAL6Q6IPX3 200 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 Q6ZNB5 142 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 C12orf50Q8NA57 414 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 TATDN2Q93075 761 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 TCEAL3Q969E4 200 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 VPS45Q9NRW7 570 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 DEC1Q9P2X7 70 aa19.79■□□□□ 0.76
CCDC88B-206ENST00000473405 BCLAF3A2AJT9 711 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 TRIM49BA6NDI0 452 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 CACNG3O60359 315 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 GBP1P32455 592 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 DCAF17Q5H9S7 520 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 PPM1JQ5JR12 505 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 C10orf120Q5SQS8 335 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 ZNF276Q8N554 614 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 TTC39CQ8N584 583 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 P2RY11Q96G91 374 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 TMEM176AQ96HP8 235 aa19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 HEXIM2Q96MH2 286 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 FAM124BQ9H5Z6 455 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-206ENST00000473405 MARK1Q9P0L2 795 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms