RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 CDH7Q9ULB5 785 aa17.82■□□□□ 0.44
COL7A1-202ENST00000422991 STRIP2Q9ULQ0 834 aa17.82■□□□□ 0.44
COL7A1-202ENST00000422991 SOBPA7XYQ1 873 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 ABL1P00519 1130 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 FTLP02792 175 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-202ENST00000422991 IL9P15248 144 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 PFKLP17858 780 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 ZNF268Q14587 947 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-202ENST00000422991 HECTD3Q5T447 861 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 BSPRYQ5W0U4 402 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 ALKBH5Q6P6C2 394 aaKnown RBP17.81■□□□□ 0.44
COL7A1-202ENST00000422991 SLC26A9Q7LBE3 791 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 OTOP3Q7RTS5 596 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 DNAAF5Q86Y56 855 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 ZNF276Q8N554 614 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 MAB21L3Q8N8X9 362 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 FAM149B1Q96BN6 582 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 VCPIP1Q96JH7 1222 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 ZSWIM3Q96MP5 696 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 BAG1Q99933 345 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-202ENST00000422991 SLITRK6Q9H5Y7 841 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 CCSER2Q9H7U1 834 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 TRPC7Q9HCX4 862 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 SPTLC3Q9NUV7 552 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 WDR35Q9P2L0 1181 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 USTQ9Y2C2 406 aa17.81■□□□□ 0.44
COL7A1-202ENST00000422991 TRAV19A0A0A6YYK7 116 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 SOWAHDA6NJG2 315 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 GOLGA8SH3BPF8 625 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 TLR5O60602 858 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 HSF2BPO75031 334 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 OLFM2O95897 454 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 GLI1P08151 1106 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 RARGP13631 454 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 GBP2P32456 591 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-202ENST00000422991 TAF5Q15542 800 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 EFHC1Q5JVL4 640 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 CCDC122Q5T0U0 273 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 FAM102AQ5T9C2 384 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-202ENST00000422991 CCDC170Q8IYT3 715 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 GOLGA1Q92805 767 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 KHSRPQ92945 711 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL7A1-202ENST00000422991 TRIM11Q96F44 468 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 SLC22A12Q96S37 553 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 CDK5RAP1Q96SZ6 601 aaKnown RBP17.8■□□□□ 0.44
COL7A1-202ENST00000422991 TRIM62Q9BVG3 475 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 SLC46A2Q9BY10 475 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 ABCC13Q9NSE7 274 aa17.8■□□□□ 0.44
COL7A1-202ENST00000422991 ZFP37Q9Y6Q3 630 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-202ENST00000422991 TCRBV5S1A1TA0A578 114 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 ZNF263O14978 683 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 COCHO43405 550 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 DAB1O75553 588 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 FYNP06241 537 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 RALAP11233 206 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 SP100P23497 879 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-202ENST00000422991 WEE1P30291 646 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 YWHAZP63104 245 aaKnown RBP17.79■□□□□ 0.44
COL7A1-202ENST00000422991 BTBD8Q5XKL5 378 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 BEND5Q7L4P6 421 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 CMTM8Q8IZV2 173 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 TDRD5Q8NAT2 981 aaKnown RBP17.79■□□□□ 0.44
COL7A1-202ENST00000422991 C3orf20Q8ND61 904 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 EDEM1Q92611 657 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 SLC2A13Q96QE2 648 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 POPDC2Q9HBU9 364 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 EPS15L1Q9UBC2 864 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 NR2E1Q9Y466 385 aa17.79■□□□□ 0.44
COL7A1-202ENST00000422991 KIF26AQ9ULI4 1882 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 C2CD4DB7Z1M9 353 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 ATMINO43313 823 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 GRAP2O75791 330 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 LCA5LO95447 670 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 CKMP06732 381 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 MYBL1P10243 752 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 LAMP2P13473 410 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 RRM1P23921 792 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 CYLC1P35663 651 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 MTF1Q14872 753 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 C10orf120Q5SQS8 335 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 MSANTD2Q6P1R3 559 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 DNAJC24Q6P3W2 148 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 KLHDC10Q6PID8 442 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 RAD9BQ6WBX8 426 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 PHLDB2Q86SQ0 1253 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 TADA2BQ86TJ2 420 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 ARL14EPQ8N8R7 260 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 ZSCAN18Q8TBC5 510 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 ZNF653Q96CK0 615 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 ACSF2Q96CM8 615 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 ASB16Q96NS5 453 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 CYP2S1Q96SQ9 504 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 RNF38Q9H0F5 515 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 METTL5Q9NRN9 209 aaKnown RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 OLA1Q9NTK5 396 aaKnown RBP17.78■□□□□ 0.44
COL7A1-202ENST00000422991 TMEM59LQ9UK28 342 aa17.78■□□□□ 0.44
COL7A1-202ENST00000422991 EIF3CLB5ME19 914 aaKnown RBP17.77■□□□□ 0.44
COL7A1-202ENST00000422991 NDUFA10O95299 355 aa17.77■□□□□ 0.44
COL7A1-202ENST00000422991 PRAMEF12O95522 483 aa17.77■□□□□ 0.44
COL7A1-202ENST00000422991 TBX18O95935 607 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms