RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 VNN2O95498 520 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 SYF2O95926 243 aaKnown RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 UNGP13051 313 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 COMTP21964 271 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 KCNA5P22460 613 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 PPP3CCP48454 512 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 PSMC1P62191 440 aaKnown RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 MESDQ14696 234 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 CNGA2Q16280 664 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 FUKQ8N0W3 1084 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 ANKRD52Q8NB46 1076 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 RBBP8NLQ8NC74 664 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 PPM1EQ8WY54 764 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 SUSD6Q92537 303 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 MYRFLQ96LU7 910 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 PGLYRP2Q96PD5 576 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 B3GNT5Q9BYG0 378 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 DPEP3Q9H4B8 488 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 DMAP1Q9NPF5 467 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 UXTQ9UBK9 157 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 YIPF1Q9Y548 306 aa10.7□□□□□ -0.7
VPS53-202ENST00000389040 ZFP37Q9Y6Q3 630 aaPredicted RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 PRRC2BQ5JSZ5 2229 aaKnown RBP10.7□□□□□ -0.7
VPS53-202ENST00000389040 GOLGA6L10A0A0M3HER8 536 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 CALCAP01258 141 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 SPATA31D3P0C874 917 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 FAM200BP0CF97 657 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 GGCXP38435 758 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 GRIK1P39086 918 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 EPHA5P54756 1037 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 GYS2P54840 703 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 MRPS5P82675 430 aaKnown RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 DLX2Q07687 328 aaPredicted RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 TWF1Q12792 350 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 PABPC1LQ4VXU2 614 aaKnown RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 CYP4A22Q5TCH4 519 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 LCLAT1Q6UWP7 414 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 EP400NLQ6ZTU2 488 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 SPATA31D4Q6ZUB0 917 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 ZNF771Q7L3S4 317 aaPredicted RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 EIF1ADQ8N9N8 165 aaKnown RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 CCDC26Q8TAB7 109 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.69□□□□□ -0.71e-7■■■■□ 26.6
VPS53-202ENST00000389040 ZNF707Q96C28 371 aaPredicted RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 TRMT2BQ96GJ1 504 aaKnown RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 TWNKQ96RR1 684 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 SEPT5Q99719 369 aaPredicted RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 MED10Q9BTT4 135 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 DUSP16Q9BY84 665 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 PIDD1Q9HB75 910 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 WDR6Q9NNW5 1121 aaKnown RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 HESX1Q9UBX0 185 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 CNOT8Q9UFF9 292 aaKnown RBP10.69□□□□□ -0.7
VPS53-202ENST00000389040 USTQ9Y2C2 406 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 SLC27A5Q9Y2P5 690 aa10.69□□□□□ -0.7
VPS53-202ENST00000389040 AGPSO00116 658 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 RTN3O95197 1032 aaPredicted RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 SETSIPP0DME0 302 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 MYBL1P10243 752 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 BDNFP23560 247 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CYP2F1P24903 491 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 MARCKSL1P49006 195 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 BCAT1P54687 386 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 ZNF211Q13398 564 aaPredicted RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 CUL1Q13616 776 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 TRADDQ15628 312 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 SMAD2Q15796 467 aaKnown RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 PPP2R5EQ16537 467 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 ZNF394Q53GI3 561 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 PAQR9Q6ZVX9 377 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 MAATS1Q7Z4T9 603 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 FAM35AQ86V20 835 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 C12orf29Q8N999 325 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 SLC2A14Q8TDB8 520 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 STK32AQ8WU08 396 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 SMG7Q92540 1137 aaKnown RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 KRT35Q92764 455 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CD101Q93033 1021 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 TRIM11Q96F44 468 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 FBXO44Q9H4M3 255 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS53-202ENST00000389040 PRKAG3Q9UGI9 489 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 HMGXB4Q9UGU5 601 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 AMACRQ9UHK6 382 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 ADAM21Q9UKJ8 722 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 VWA8A3KMH1 1905 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CLUHO75153 1309 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 MYO9BQ13459 2157 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 GRXCR2A6NFK2 248 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 BHMG1C9JSJ3 638 aaPredicted RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 O00370 1275 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 HCRTO43612 131 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 SPOPO43791 374 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 RNF40O75150 1001 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 RFPL2O75678 378 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 CYP1A1P04798 512 aaPredicted RBP10.68□□□□□ -0.7
VPS53-202ENST00000389040 FAM153BP0C7A2 387 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 NPR3P17342 541 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 PFKLP17858 780 aa10.68□□□□□ -0.7
VPS53-202ENST00000389040 GNA15P30679 374 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms