RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 EPN3Q9H201 632 aa13.02□□□□□ -0.32
VRK3-202ENST00000377011 DPEP3Q9H4B8 488 aa13.02□□□□□ -0.32
VRK3-202ENST00000377011 ZNF334Q9HCZ1 680 aaPredicted RBP13.02□□□□□ -0.32
VRK3-202ENST00000377011 DDX43Q9NXZ2 648 aaKnown RBP13.02□□□□□ -0.32
VRK3-202ENST00000377011 UTP11Q9Y3A2 253 aaKnown RBP13.02□□□□□ -0.32
VRK3-202ENST00000377011 MYBPHLA2RUH7 354 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 OR6C75A6NL08 312 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 GABRDO14764 452 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 DDX3YO15523 660 aaKnown RBP13.02□□□□□ -0.33
VRK3-202ENST00000377011 PDGFBP01127 241 aaPredicted RBP13.02□□□□□ -0.33
VRK3-202ENST00000377011 RHOP08100 348 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 HNRNPA1P09651 372 aaKnown RBP eCLIP13.02□□□□□ -0.33
VRK3-202ENST00000377011 CEBPBP17676 345 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 TNFAIP3P21580 790 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 FSHRP23945 695 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 HOXA9P31269 272 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 GBP2P32456 591 aaPredicted RBP13.02□□□□□ -0.33
VRK3-202ENST00000377011 HSD17B3P37058 310 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 CCT5P48643 541 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 EIF3BP55884 814 aaKnown RBP13.02□□□□□ -0.33
VRK3-202ENST00000377011 DHX34Q14147 1143 aaKnown RBP13.02□□□□□ -0.33
VRK3-202ENST00000377011 PRSS36Q5K4E3 855 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 TPGS2Q68CL5 300 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 SV2AQ7L0J3 742 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 YTHDF3Q7Z739 585 aaKnown RBP13.02□□□□□ -0.33
VRK3-202ENST00000377011 ADGRF2Q8IZF7 708 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 FGF14Q92915 247 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 ZBTB9Q96C00 473 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 ZSWIM3Q96MP5 696 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 CORO1BQ9BR76 489 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 SMYD3Q9H7B4 428 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 CRTAC1Q9NQ79 661 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 GTF3C4Q9UKN8 822 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 NFS1Q9Y697 457 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 FAM169AQ9Y6X4 670 aa13.02□□□□□ -0.33
VRK3-202ENST00000377011 NDUFAB1O14561 156 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 BUB1BO60566 1050 aaPredicted RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 MTA2O94776 668 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 PDGFRBP09619 1106 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 LSP1P33241 339 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 MDH1P40925 334 aaKnown RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 PNPLA4P41247 253 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 GCLMP48507 274 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 DRG2P55039 364 aaKnown RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 ORC1Q13415 861 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 SURF1Q15526 300 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 CBWD6Q4V339 395 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 PABPC1LQ4VXU2 614 aaKnown RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 CBWD3Q5JTY5 395 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 CBWD5Q5RIA9 395 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 CEP85LQ5SZL2 805 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 STXBP5Q5T5C0 1151 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 GJB7Q6PEY0 223 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 PARM1Q6UWI2 310 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 SCARA5Q6ZMJ2 495 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 TMC8Q8IU68 726 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 SUGP1Q8IWZ8 645 aaKnown RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 ZDHHC14Q8IZN3 488 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 SLC35G2Q8TBE7 412 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 FGF13Q92913 245 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 LRFN3Q9BTN0 628 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 KCNK12Q9HB15 430 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 APOBEC3GQ9HC16 384 aaKnown RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 TMEM30AQ9NV96 361 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 NXF1Q9UBU9 619 aaKnown RBP13.01□□□□□ -0.33
VRK3-202ENST00000377011 USTQ9Y2C2 406 aa13.01□□□□□ -0.33
VRK3-202ENST00000377011 VPS13AQ96RL7 3174 aa13□□□□□ -0.33
VRK3-202ENST00000377011 PTPRDP23468 1912 aa13□□□□□ -0.33
VRK3-202ENST00000377011 LAMP2P13473 410 aa13□□□□□ -0.33
VRK3-202ENST00000377011 CYP2F1P24903 491 aa13□□□□□ -0.33
VRK3-202ENST00000377011 ELF1P32519 619 aa13□□□□□ -0.33
VRK3-202ENST00000377011 USP8P40818 1118 aa13□□□□□ -0.33
VRK3-202ENST00000377011 VAMP7P51809 220 aa13□□□□□ -0.33
VRK3-202ENST00000377011 CACNA2D1P54289 1103 aa13□□□□□ -0.33
VRK3-202ENST00000377011 ZXDAP98168 799 aa13□□□□□ -0.33
VRK3-202ENST00000377011 PDCLQ13371 301 aa13□□□□□ -0.33
VRK3-202ENST00000377011 WDR72Q3MJ13 1102 aa13□□□□□ -0.33
VRK3-202ENST00000377011 ZACNQ401N2 412 aa13□□□□□ -0.33
VRK3-202ENST00000377011 CROCCP2Q86T23 111 aa13□□□□□ -0.33
VRK3-202ENST00000377011 NPAS3Q8IXF0 933 aa13□□□□□ -0.33
VRK3-202ENST00000377011 LMO3Q8TAP4 145 aa13□□□□□ -0.33
VRK3-202ENST00000377011 TAS1R2Q8TE23 839 aa13□□□□□ -0.33
VRK3-202ENST00000377011 GIPC2Q8TF65 315 aa13□□□□□ -0.33
VRK3-202ENST00000377011 SEMA4DQ92854 862 aa13□□□□□ -0.33
VRK3-202ENST00000377011 MCRS1Q96EZ8 462 aa13□□□□□ -0.33
VRK3-202ENST00000377011 RUNDC3BQ96NL0 473 aa13□□□□□ -0.33
VRK3-202ENST00000377011 SEPT5Q99719 369 aaPredicted RBP13□□□□□ -0.33
VRK3-202ENST00000377011 FAM129AQ9BZQ8 928 aa13□□□□□ -0.33
VRK3-202ENST00000377011 DDX47Q9H0S4 455 aaKnown RBP13□□□□□ -0.33
VRK3-202ENST00000377011 ABI2Q9NYB9 513 aaPredicted RBP13□□□□□ -0.33
VRK3-202ENST00000377011 HMGXB4Q9UGU5 601 aa13□□□□□ -0.33
VRK3-202ENST00000377011 DPP7Q9UHL4 492 aa13□□□□□ -0.33
VRK3-202ENST00000377011 NR2E1Q9Y466 385 aa13□□□□□ -0.33
VRK3-202ENST00000377011 GTF3C5Q9Y5Q8 519 aaPredicted RBP13□□□□□ -0.33
VRK3-202ENST00000377011 HUS1O60921 280 aa12.99□□□□□ -0.33
VRK3-202ENST00000377011 PPFIA2O75334 1257 aa12.99□□□□□ -0.33
VRK3-202ENST00000377011 LRG1P02750 347 aa12.99□□□□□ -0.33
VRK3-202ENST00000377011 CTNNA1P35221 906 aaKnown RBP12.99□□□□□ -0.33
VRK3-202ENST00000377011 RNASE9P60153 205 aaKnown RBP12.99□□□□□ -0.33
VRK3-202ENST00000377011 ENPEPQ07075 957 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms