RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CSTF1Q05048 431 aaKnown RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 HTR4Q13639 388 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 ZNF484Q5JVG2 852 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 ANKRD40Q6AI12 368 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 SPOCD1Q6ZMY3 1216 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 ANO5Q75V66 913 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 ZNF720Q7Z2F6 126 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 CCDC186Q7Z3E2 898 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 TMC6Q7Z403 805 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 BHLHE22Q8NFJ8 381 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 KIAA1524Q8TCG1 905 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 PIGOQ8TEQ8 1089 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 UBE2FQ969M7 185 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 SHDQ96IW2 340 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 NAP1L5Q96NT1 182 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 TUBGCP2Q9BSJ2 902 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 DDX23Q9BUQ8 820 aaKnown RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 SRRTQ9BXP5 876 aaKnown RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 GBP3Q9H0R5 595 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 ZNF302Q9NR11 478 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 PRMT8Q9NR22 394 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 MAN1C1Q9NR34 630 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 STK39Q9UEW8 545 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.49□□□□□ -1.21
VPS13A-201ENST00000355766 NUMBLQ9Y6R0 609 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 PATJQ8NI35 1801 aa7.49□□□□□ -1.21
VPS13A-201ENST00000355766 WDR81Q562E7 1941 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 COL4A3Q01955 1670 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 ARID2Q68CP9 1835 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 MYH9P35579 1960 aaKnown RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 CCDC195A0A1B0GUA6 201 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 TRIM49BA6NDI0 452 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 DDX39AO00148 427 aaKnown RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 PMM2O15305 246 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 INPPL1O15357 1258 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 HIP1RO75146 1068 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 STBD1O95210 358 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 GCNT3O95395 438 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 LAMP2P13473 410 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 NR2F2P24468 414 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 PMLP29590 882 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 GDNFP39905 211 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 SLC11A1P49279 550 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 SHC2P98077 582 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 CDK17Q00537 523 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 UBXN2BQ14CS0 331 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 TARBP2Q15633 366 aaKnown RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 UGCGQ16739 394 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 XKR9Q5GH70 373 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 PRR23BQ6ZRT6 265 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 GET4Q7L5D6 327 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 THAP5Q7Z6K1 395 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 USP37Q86T82 979 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 CDH24Q86UP0 819 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 CILP2Q8IUL8 1156 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 CCDC60Q8IWA6 550 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 TRIM59Q8IWR1 403 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 DAW1Q8N136 415 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 MYCT1Q8N699 235 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 SMG7Q92540 1137 aaKnown RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 ZNF707Q96C28 371 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 OSBPL6Q9BZF3 934 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 ADAMTS10Q9H324 1103 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 DHX33Q9H6R0 707 aaKnown RBP7.48□□□□□ -1.21
VPS13A-201ENST00000355766 NRDE2Q9H7Z3 1164 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 NRBP2Q9NSY0 501 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 TBC1D13Q9NVG8 400 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 GABBR1Q9UBS5 961 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 FBXL5Q9UKA1 691 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 AK5Q9Y6K8 562 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 MYO10Q9HD67 2058 aa7.48□□□□□ -1.21
VPS13A-201ENST00000355766 SPEGQ15772 3267 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ZMYM2Q9UBW7 1377 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 AKR1B15C9JRZ8 316 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 K7ENM7 598 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 P4HA2O15460 535 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 B4GALT3O60512 393 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 LRP3O75074 770 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MFAP3LO75121 409 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 GLUD1P00367 558 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 PIGRP01833 764 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 NR3C1P04150 777 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 GALTP07902 379 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 EPB41P11171 864 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 SKILP12757 684 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 ANXA13P27216 316 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 HNRNPH3P31942 346 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 NAMPTP43490 491 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MTIF2P46199 727 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 CLCN3P51790 818 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 EFNA5P52803 228 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 NLRP11P59045 1033 aaKnown RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 CCZ1BP86790 482 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 CCZ1P86791 482 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 TNK2Q07912 1038 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MLF2Q15773 248 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-201ENST00000355766 VWA3BQ502W6 1294 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 FBLN7Q53RD9 439 aa7.47□□□□□ -1.21
VPS13A-201ENST00000355766 MIIPQ5JXC2 388 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms