RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PPP2R3CQ969Q6 453 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 MRGBPQ9NV56 204 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 GGA3Q9NZ52 723 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 CHADO15335 359 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 ATP6V1C1P21283 382 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 ZCCHC23Q6ZST2 131 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 SLC7A14Q8TBB6 771 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 FAM193BQ96PV7 902 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 PMM2O15305 246 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 CSDE1O75534 798 aaKnown RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 SLIT2O94813 1529 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 CDC42EP1Q00587 391 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 CLNKQ7Z7G1 428 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 MYLK4Q86YV6 388 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 DEFB107AQ8IZN7 70 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 USP33Q8TEY7 942 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 NKD2Q969F2 451 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 PBXIP1Q96AQ6 731 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 IL1RAPL1Q9NZN1 696 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 ATP5BP06576 529 aaKnown RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 SLC1A6P48664 564 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 SLC26A2P50443 739 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 YWHAHQ04917 246 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 BST1Q10588 318 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 POU5F2Q8N7G0 328 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 PPHLN1Q8NEY8 458 aaKnown RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 KLHL4Q9C0H6 718 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 ANGPTL3Q9Y5C1 460 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 TIMM44O43615 452 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 KRT36O76013 467 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 S100BP04271 92 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-201ENST00000323668 KCNA4P22459 653 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 SERPINB8P50452 374 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 GRM1Q13255 1194 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 ITGA9Q13797 1035 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 NAPEPLDQ6IQ20 393 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 KDELC2Q7Z4H8 507 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 COLGALT1Q8NBJ5 622 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 BSNDQ8WZ55 320 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 SLCO2A1Q92959 643 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 CORO1CQ9ULV4 474 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-201ENST00000323668 E9PBE3 544 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 M0QYT0 321 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 KLHL41O60662 606 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 CA8P35219 290 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 SERPINB5P36952 375 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 TGFB2P61812 414 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 PDPK2PQ6A1A2 396 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 CYP4X1Q8N118 509 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 SEC14L1Q92503 715 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 ASB7Q9H672 318 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 ELP3Q9H9T3 547 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 FBXO6Q9NRD1 293 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-201ENST00000323668 PPME1Q9Y570 386 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 ATP6V1B1P15313 513 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 IL10P22301 178 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 RANBP1P43487 201 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 TMEM62Q0P6H9 643 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 FASTKD3Q14CZ7 662 aaKnown RBP15.22■□□□□ 0.03
TCOF1-201ENST00000323668 AMHR2Q16671 573 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 KYAT3Q6YP21 454 aaKnown RBP15.22■□□□□ 0.03
TCOF1-201ENST00000323668 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.22■□□□□ 0.032e-7■■■■■ 102.3
TCOF1-201ENST00000323668 NPTXRO95502 500 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 CNTN2Q02246 1040 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 STRA8Q7Z7C7 330 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 UNC45BQ8IWX7 931 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 SLC17A7Q9P2U7 560 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 EFR3BQ9Y2G0 817 aa15.22■□□□□ 0.03
TCOF1-201ENST00000323668 TCRBV9S1A1TA0A576 114 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 MOCS2O96007 188 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ADSSP30520 456 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 NPNTQ6UXI9 565 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 FASTKD5Q7L8L6 764 aaKnown RBP15.21■□□□□ 0.03
TCOF1-201ENST00000323668 SIKE1Q9BRV8 207 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 PHACTR1Q9C0D0 580 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 EFCAB1Q9HAE3 211 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ARHGEF3Q9NR81 526 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 A0A087WZ62 844 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 E5RJQ4 531 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 TCEA3O75764 348 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ZBTB7AO95365 584 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 C4BPAP04003 597 aaKnown RBP15.21■□□□□ 0.03
TCOF1-201ENST00000323668 UNGP13051 313 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-201ENST00000323668 LAMC2Q13753 1193 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 GLRA4Q5JXX5 417 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 KCNT2Q6UVM3 1135 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 TDRPQ86YL5 185 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 FDXACB1Q9BRP7 624 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-201ENST00000323668 AURKCQ9UQB9 309 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 GSTA4O15217 222 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ATP4AP20648 1035 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ECHS1P30084 290 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 GP5P40197 560 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 BCAT1P54687 386 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ZNF484Q5JVG2 852 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 LCA5Q86VQ0 697 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 SCN4BQ8IWT1 228 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 ETNK2Q9NVF9 386 aa15.21■□□□□ 0.03
TCOF1-201ENST00000323668 NFASCO94856 1347 aa15.21■□□□□ 0.02
TCOF1-201ENST00000323668 CYP1A1P04798 512 aaPredicted RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms