RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C YFL067WP43537 175 aa3.61□□□□□ -1.83
VPS1YKR001C GIS2P53849 153 aaKnown RBP RIP-Chip data3.59□□□□□ -1.83not detected
VPS1YKR001C Q0032Q9ZZX7 96 aa3.59□□□□□ -1.84
VPS1YKR001C VAM10Q08474 114 aa3.58□□□□□ -1.84
VPS1YKR001C YBR201C-AQ2V2Q3 67 aa3.58□□□□□ -1.84
VPS1YKR001C YGL041C-BQ3E750 60 aa3.57□□□□□ -1.84
VPS1YKR001C TAR1Q8TGM6 124 aa3.57□□□□□ -1.84
VPS1YKR001C RDS3Q06835 107 aaPredicted RBP3.56□□□□□ -1.84
VPS1YKR001C YBL039W-BP0C268 59 aa3.56□□□□□ -1.84
VPS1YKR001C YDL012CQ12489 107 aa3.56□□□□□ -1.84
VPS1YKR001C YOL085CQ99345 113 aa3.56□□□□□ -1.84
VPS1YKR001C YLL006W-AQ3E814 58 aa3.55□□□□□ -1.84
VPS1YKR001C YLR255CO13574 117 aa3.54□□□□□ -1.84
VPS1YKR001C RPL33AP05744 107 aaKnown RBP3.54□□□□□ -1.84
VPS1YKR001C YOL097W-AQ3E7Y9 61 aa3.54□□□□□ -1.84
VPS1YKR001C MVB12P42939 101 aa3.53□□□□□ -1.84
VPS1YKR001C YHR213W-BQ8TGK1 99 aa3.52□□□□□ -1.85
VPS1YKR001C YBR200W-AQ3E755 54 aa3.49□□□□□ -1.85
VPS1YKR001C YJL133C-AQ3E7A3 74 aa3.49□□□□□ -1.85
VPS1YKR001C YGR025WP53216 100 aa3.49□□□□□ -1.85
VPS1YKR001C YGR240C-AQ3E786 66 aa3.48□□□□□ -1.85
VPS1YKR001C YOR072WQ08486 104 aa3.47□□□□□ -1.85
VPS1YKR001C YOR011W-AQ3E807 68 aa3.46□□□□□ -1.86
VPS1YKR001C YJL144WP47009 104 aa3.46□□□□□ -1.86
VPS1YKR001C RPL29P05747 59 aaPredicted RBP3.41□□□□□ -1.86
VPS1YKR001C YAR064WP39563 99 aa3.41□□□□□ -1.86
VPS1YKR001C YHR007C-AQ07074 71 aa3.41□□□□□ -1.86
VPS1YKR001C YNL146C-AQ3E7Z1 64 aa3.4□□□□□ -1.86
VPS1YKR001C YJR128WP47162 119 aa3.38□□□□□ -1.87
VPS1YKR001C YLR307C-AQ3E825 87 aa3.38□□□□□ -1.87
VPS1YKR001C COX7P10174 60 aa3.37□□□□□ -1.87
VPS1YKR001C YNL162W-AQ3E7A8 72 aa3.37□□□□□ -1.87
VPS1YKR001C YOR394C-AQ8TGJ0 55 aa3.37□□□□□ -1.87
VPS1YKR001C YBR230W-AQ3E762 66 aa3.35□□□□□ -1.87
VPS1YKR001C LCL1Q02786 101 aa3.35□□□□□ -1.87
VPS1YKR001C YJL127C-BQ3E828 52 aa3.34□□□□□ -1.87
VPS1YKR001C DDR2P89113 61 aa3.34□□□□□ -1.88
VPS1YKR001C PMP3P87284 55 aa3.31□□□□□ -1.88
VPS1YKR001C YJL009WP47078 108 aa3.24□□□□□ -1.89
VPS1YKR001C OLI1P61829 76 aa3.24□□□□□ -1.89
VPS1YKR001C YCR108CQ3E819 63 aa3.24□□□□□ -1.89
VPS1YKR001C YLL066W-BQ8TGJ7 56 aa3.24□□□□□ -1.89
VPS1YKR001C YGR146C-AQ8TGT9 53 aa3.23□□□□□ -1.89
VPS1YKR001C RPL37BP51402 88 aaKnown RBP3.2□□□□□ -1.9
VPS1YKR001C YDR034C-AP0C289 58 aa3.19□□□□□ -1.9
VPS1YKR001C YBL044WP38194 122 aa3.19□□□□□ -1.9
VPS1YKR001C RPC10P40422 70 aa3.19□□□□□ -1.9
VPS1YKR001C YBR016WP38216 128 aa3.11□□□□□ -1.91
VPS1YKR001C YMR230W-AQ3E7B5 62 aa3.08□□□□□ -1.92
VPS1YKR001C YOR316C-AQ3E806 69 aa3.06□□□□□ -1.92
VPS1YKR001C YHR073W-AP0C5N7 58 aa3.01□□□□□ -1.93
VPS1YKR001C YBR072C-AQ3E794 53 aa3.01□□□□□ -1.93
VPS1YKR001C HHY1P39982 102 aa2.97□□□□□ -1.93
VPS1YKR001C YHR086W-AQ3E746 53 aa2.89□□□□□ -1.95
VPS1YKR001C RPL37AP49166 88 aaKnown RBP2.87□□□□□ -1.95
VPS1YKR001C YOR072W-BQ3E832 53 aa2.81□□□□□ -1.96
VPS1YKR001C YOL164W-AQ3E7A5 60 aa2.72□□□□□ -1.97
VPS1YKR001C YLR157W-EP0CF00 54 aa2.5□□□□□ -2.01
VPS1YKR001C Q0017Q9ZZX8 53 aa2.47□□□□□ -2.01
VPS1YKR001C YML054C-AQ3E809 52 aa2.37□□□□□ -2.03
VPS1YKR001C RPS29AP41057 56 aaKnown RBP2.36□□□□□ -2.03
VPS1YKR001C RPS29BP41058 56 aaKnown RBP2.32□□□□□ -2.04
VPS1YKR001C YHR050W-AQ05451 56 aa2.14□□□□□ -2.07
Retrieved 63 of 5,963 RNA–protein pairs in 8.8 ms