RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 LY6G5CQ5SRR4 150 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 KRBA2Q6ZNG9 492 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 INTS8Q75QN2 995 aaKnown RBP17.01■□□□□ 0.31
CLN3-229ENST00000567963 CCDC33Q8N5R6 958 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 SCAND2PQ9GZW5 306 aaPredicted RBP17.01■□□□□ 0.31
CLN3-229ENST00000567963 FAM49BQ9NUQ9 324 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 SPTBN2O15020 2390 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 A0A1W2PQ27 194 aa17■□□□□ 0.31
CLN3-229ENST00000567963 A0A1W2PQ64 194 aa17■□□□□ 0.31
CLN3-229ENST00000567963 A0A1W2PQD8 194 aa17■□□□□ 0.31
CLN3-229ENST00000567963 APODP05090 189 aa17■□□□□ 0.31
CLN3-229ENST00000567963 GRIA2P42262 883 aa17■□□□□ 0.31
CLN3-229ENST00000567963 GCLMP48507 274 aa17■□□□□ 0.31
CLN3-229ENST00000567963 GAD2Q05329 585 aa17■□□□□ 0.31
CLN3-229ENST00000567963 ENPEPQ07075 957 aa17■□□□□ 0.31
CLN3-229ENST00000567963 PPP3CAQ08209 521 aa17■□□□□ 0.31
CLN3-229ENST00000567963 INCA1Q0VD86 236 aa17■□□□□ 0.31
CLN3-229ENST00000567963 USP39Q53GS9 565 aaKnown RBP17■□□□□ 0.31
CLN3-229ENST00000567963 PPM1JQ5JR12 505 aa17■□□□□ 0.31
CLN3-229ENST00000567963 TMEM92Q6UXU6 159 aa17■□□□□ 0.31
CLN3-229ENST00000567963 GUF1Q8N442 669 aaKnown RBP17■□□□□ 0.31
CLN3-229ENST00000567963 ALLCQ8N6M5 410 aa17■□□□□ 0.31
CLN3-229ENST00000567963 IL17RCQ8NAC3 791 aa17■□□□□ 0.31
CLN3-229ENST00000567963 CNOT6LQ96LI5 555 aaKnown RBP17■□□□□ 0.31
CLN3-229ENST00000567963 TWNKQ96RR1 684 aa17■□□□□ 0.31
CLN3-229ENST00000567963 HNRNPABQ99729 332 aaKnown RBP17■□□□□ 0.31
CLN3-229ENST00000567963 TPSD1Q9BZJ3 242 aa17■□□□□ 0.31
CLN3-229ENST00000567963 IMPG2Q9BZV3 1241 aa17■□□□□ 0.31
CLN3-229ENST00000567963 SMOC1Q9H4F8 434 aa17■□□□□ 0.31
CLN3-229ENST00000567963 APOBEC3GQ9HC16 384 aaKnown RBP17■□□□□ 0.31
CLN3-229ENST00000567963 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17■□□□□ 0.316e-9■■■■■ 134.6
CLN3-229ENST00000567963 TLR8Q9NR97 1041 aaKnown RBP17■□□□□ 0.31
CLN3-229ENST00000567963 VPS45Q9NRW7 570 aa17■□□□□ 0.31
CLN3-229ENST00000567963 INVSQ9Y283 1065 aa17■□□□□ 0.31
CLN3-229ENST00000567963 ATP6V1DQ9Y5K8 247 aa17■□□□□ 0.31
CLN3-229ENST00000567963 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 TLR5O60602 858 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 ZNF202O95125 648 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 ADRB1P08588 477 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 FAM200BP0CF97 657 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 TRIM49P0CI25 452 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 TRIM49CP0CI26 452 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 CHRM1P11229 460 aaPredicted RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 TRIM21P19474 475 aaKnown RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 RPL13P26373 211 aaKnown RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 ADORA2BP29275 332 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 TIE1P35590 1138 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 PSMC2P35998 433 aaKnown RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 TNFRSF4P43489 277 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 KIR2DL1P43626 348 aaPredicted RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 ADAM9Q13443 819 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 HSF5Q4G112 596 aaPredicted RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 EMC10Q5UCC4 262 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 ANO7Q6IWH7 933 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 CLEC20AQ6ZU45 233 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 BBS7Q8IWZ6 715 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 FAM186BQ8IYM0 893 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 PHTF2Q8N3S3 785 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 TXNDC5Q8NBS9 432 aaKnown RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 MDGA1Q8NFP4 955 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 TAS1R2Q8TE23 839 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 DDX1Q92499 740 aaKnown RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 WBP2Q969T9 261 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 CYFIP2Q96F07 1278 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 NT5C1AQ9BXI3 368 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 NACA2Q9H009 215 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 GOLPH3LQ9H4A5 285 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 CYP3A43Q9HB55 503 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 ARHGEF4Q9NR80 690 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 SPHK2Q9NRA0 654 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 ABCA7Q8IZY2 2146 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 HHLA1C9JL84 531 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 TM4SF5O14894 197 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 KLF8O95600 359 aaPredicted RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 TBX18O95935 607 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 KRT13P13646 458 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 HNRNPLP14866 589 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLN3-229ENST00000567963 GBP1P32455 592 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 MCCD1P59942 119 aaPredicted RBP16.99■□□□□ 0.31
CLN3-229ENST00000567963 CREB5Q02930 508 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 KDSRQ06136 332 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 IL31Q6EBC2 164 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 GPRIN1Q7Z2K8 1008 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 C11orf74Q86VG3 221 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 ETFBKMTQ8IXQ9 262 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 NAT16Q8N8M0 369 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 WHAMMQ8TF30 809 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 SCML2Q9UQR0 700 aa16.99■□□□□ 0.31
CLN3-229ENST00000567963 BCLAF3A2AJT9 711 aaKnown RBP16.98■□□□□ 0.31
CLN3-229ENST00000567963 SGK1O00141 431 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 HOXC11O43248 304 aaPredicted RBP16.98■□□□□ 0.31
CLN3-229ENST00000567963 GREM1O60565 184 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 IRF1P10914 325 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 ZCWPW2Q504Y3 356 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 STPG1Q5TH74 334 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 BTBD8Q5XKL5 378 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 PMS2CLQ68D20 193 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 HTR3DQ70Z44 454 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 TMEM25Q86YD3 366 aa16.98■□□□□ 0.31
CLN3-229ENST00000567963 KLF16Q9BXK1 252 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms