RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LY6G5CQ5SRR4 150 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 PMS2CLQ68D20 193 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 TMEM92Q6UXU6 159 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 ETFBKMTQ8IXQ9 262 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 IL17RCQ8NAC3 791 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 SLC2A14Q8TDB8 520 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 HMGXB4Q9UGU5 601 aa18.13■□□□□ 0.49
CLN3-216ENST00000565316 HOXC11O43248 304 aaPredicted RBP18.12■□□□□ 0.49
CLN3-216ENST00000565316 CALUO43852 315 aaPredicted RBP18.12■□□□□ 0.49
CLN3-216ENST00000565316 CAVIN2O95810 425 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 CCDC130P13994 396 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 PGFP49763 221 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 GAD2Q05329 585 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 ANO7Q6IWH7 933 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 ALLCQ8N6M5 410 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 MDGA1Q8NFP4 955 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 TPSD1Q9BZJ3 242 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 FBXO44Q9H4M3 255 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 ARHGEF4Q9NR80 690 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 FRMD4BQ9Y2L6 1034 aa18.12■□□□□ 0.49
CLN3-216ENST00000565316 SGK1O00141 431 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 GREM1O60565 184 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 RHOBTB3O94955 611 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 CLSTN1O94985 981 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 KIF20AO95235 890 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 HLA-DRAP01903 254 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 MCCD1P59942 119 aaPredicted RBP18.11■□□□□ 0.49
CLN3-216ENST00000565316 CREB5Q02930 508 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 ENPEPQ07075 957 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 INCA1Q0VD86 236 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 ORC1Q13415 861 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 EMC10Q5UCC4 262 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 CEP135Q66GS9 1140 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 TCEAL6Q6IPX3 200 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 SPOPLQ6IQ16 392 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 BBS7Q8IWZ6 715 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 C12orf29Q8N999 325 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 TXNDC5Q8NBS9 432 aaKnown RBP18.11■□□□□ 0.49
CLN3-216ENST00000565316 SPRYD3Q8NCJ5 442 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 KCNV2Q8TDN2 545 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 TCEAL3Q969E4 200 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 WBP2Q969T9 261 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 SPATA32Q96LK8 384 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 HNRNPABQ99729 332 aaKnown RBP18.11■□□□□ 0.49
CLN3-216ENST00000565316 LSM14BQ9BX40 385 aaKnown RBP18.11■□□□□ 0.49
CLN3-216ENST00000565316 INVSQ9Y283 1065 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 ZDHHC9Q9Y397 364 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 SH3BP1Q9Y3L3 701 aa18.11■□□□□ 0.49
CLN3-216ENST00000565316 TLR5O60602 858 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 ADAM23O75077 832 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 ALDH1A2O94788 518 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 KLF8O95600 359 aaPredicted RBP18.1■□□□□ 0.49
CLN3-216ENST00000565316 BCKDHBP21953 392 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 GBP1P32455 592 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 TIE1P35590 1138 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 SYKP43405 635 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 VAMP7P51809 220 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 MAP3K7CLP57077 242 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 KDSRQ06136 332 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 HTR3DQ70Z44 454 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 ABCA7Q8IZY2 2146 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 KLF16Q9BXK1 252 aaPredicted RBP18.1■□□□□ 0.49
CLN3-216ENST00000565316 CYP3A43Q9HB55 503 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 CYLDQ9NQC7 956 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 SPHK2Q9NRA0 654 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 SCML2Q9UQR0 700 aa18.1■□□□□ 0.49
CLN3-216ENST00000565316 MAP1BP46821 2468 aaKnown RBP18.1■□□□□ 0.49
CLN3-216ENST00000565316 MYOFQ9NZM1 2061 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 USP24Q9UPU5 2620 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 HHLA1C9JL84 531 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 FAM200BP0CF97 657 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 PIK3CAP42336 1068 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 NDUFA8P51970 172 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 KRT85P78386 507 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 DPYDQ12882 1025 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 PREPLQ4J6C6 727 aaPredicted RBP18.09■□□□□ 0.49
CLN3-216ENST00000565316 EOGTQ5NDL2 527 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 RNF43Q68DV7 783 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 CLEC20AQ6ZU45 233 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 INTS8Q75QN2 995 aaKnown RBP18.09■□□□□ 0.49
CLN3-216ENST00000565316 TMEM25Q86YD3 366 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 CHAMP1Q96JM3 812 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 TWNKQ96RR1 684 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 APOBEC3GQ9HC16 384 aaKnown RBP18.09■□□□□ 0.49
CLN3-216ENST00000565316 TLR8Q9NR97 1041 aaKnown RBP18.09■□□□□ 0.49
CLN3-216ENST00000565316 FAM49BQ9NUQ9 324 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 DEC1Q9P2X7 70 aa18.09■□□□□ 0.49
CLN3-216ENST00000565316 TULP3O75386 442 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 TBX18O95935 607 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 PRR29P0C7W0 189 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 NR2F2P24468 414 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 PMLP29590 882 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 P2RY2P41231 377 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 PPP3CAQ08209 521 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 N4BP2L1Q5TBK1 243 aaPredicted RBP18.08■□□□□ 0.49
CLN3-216ENST00000565316 BTBD8Q5XKL5 378 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 GPRIN1Q7Z2K8 1008 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 GUF1Q8N442 669 aaKnown RBP18.08■□□□□ 0.49
CLN3-216ENST00000565316 TAS1R2Q8TE23 839 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 WHAMMQ8TF30 809 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms