RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CILPO75339 1184 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 OLFM2O95897 454 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 OAS1P00973 400 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TMEM191BP0C7N4 346 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 LMO2P25791 158 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 CD6P30203 668 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 ZNF131P52739 623 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 HMGN5P82970 282 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 MYO1EQ12965 1108 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 MCM6Q14566 821 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 SOWAHAQ2M3V2 549 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TMEM119Q4V9L6 283 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 EGFLAMQ63HQ2 1017 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 HS2ST1Q7LGA3 356 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TMEM25Q86YD3 366 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 ETFBKMTQ8IXQ9 262 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 PDCD7Q8N8D1 485 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 RASSF8Q8NHQ8 419 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 SCFD1Q8WVM8 642 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 SAAL1Q96ER3 474 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 CALML4Q96GE6 196 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 FAM84AQ96KN4 292 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 CEP295NLQ96MC4 621 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 ACOX2Q99424 681 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 LLPHQ9BRT6 129 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TTLL2Q9BWV7 592 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 GPR174Q9BXC1 333 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 SLC6A17Q9H1V8 727 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 IKZF4Q9H2S9 585 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 CD93Q9NPY3 652 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 CRTAC1Q9NQ79 661 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 SPHK2Q9NRA0 654 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 DNAJC17Q9NVM6 304 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 DACH1Q9UI36 760 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 ITGA11Q9UKX5 1188 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 CDH9Q9ULB4 789 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 FNDC3AQ9Y2H6 1198 aaKnown RBP7.8□□□□□ -1.16
VPS4A-203ENST00000564399 RAD54BQ9Y620 910 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 STYXL1Q9Y6J8 313 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TMEM131Q92545 1883 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 ATXN7O15265 892 aaPredicted RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 BCAT2O15382 392 aaPredicted RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 FLRT2O43155 660 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 HOXC11O43248 304 aaPredicted RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 C1QL1O75973 258 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 ZNF883P0CG24 379 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 IRF1P10914 325 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 NCAM1P13591 858 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 PLA2G2AP14555 144 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 ITPKBP27987 946 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 UBA7P41226 1012 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 WNT7BP56706 349 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 NOP14P78316 857 aaKnown RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 SUZ12Q15022 739 aaKnown RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 HLA-BQ31612 363 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 MDH1BQ5I0G3 518 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 SCARA3Q6AZY7 606 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 MCTP1Q6DN14 999 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 IL27RAQ6UWB1 636 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 LRRC69Q6ZNQ3 347 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 DPH6Q7L8W6 267 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 BRSK2Q8IWQ3 736 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 BBS7Q8IWZ6 715 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 TOE1Q96GM8 510 aaKnown RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 PCED1BQ96HM7 432 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 MRGPRX1Q96LB2 322 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 C8orf48Q96LL4 319 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 XPO6Q96QU8 1125 aaKnown RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 FIZ1Q96SL8 496 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 MMS19Q96T76 1030 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 NACA2Q9H009 215 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 IGSF5Q9NSI5 407 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 TOR4AQ9NXH8 423 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 RBAKQ9NYW8 714 aaPredicted RBP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 HCN2Q9UL51 889 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS4A-203ENST00000564399 LIMCH1Q9UPQ0 1083 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 EXOC7Q9UPT5 735 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 STARD13Q9Y3M8 1113 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 MYLKQ15746 1914 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 KALRNO60229 2985 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 HECTD1Q9ULT8 2610 aa7.79□□□□□ -1.16
VPS4A-203ENST00000564399 CFAP46Q8IYW2 2715 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 A0A1B0GVT2 93 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 GOLGA8IPA6NC78 632 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 GOLGA8JA6NMD2 632 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 WASH3PC4AMC7 463 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 NEDD8-MDP1E9PL57 170 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 CAPN9O14815 690 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 COCHO43405 550 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 LDHAP00338 332 aaKnown RBP7.78□□□□□ -1.16
VPS4A-203ENST00000564399 HLA-EP13747 358 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 YWHAQP27348 245 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 ADSSP30520 456 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 CAMK2BQ13554 666 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 STARD3Q14849 445 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 RILPL1Q5EBL4 403 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 HECTD3Q5T447 861 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 DCAF12L1Q5VU92 463 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms