RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 SAFBQ15424 915 aaKnown RBP eCLIP4.04□□□□□ -1.76
SPG11-206ENST00000558093 ST3GAL2Q16842 350 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 RNASE12Q5GAN4 147 aaKnown RBP4.04□□□□□ -1.76
SPG11-206ENST00000558093 RRAGBQ5VZM2 374 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 CYB5RLQ6IPT4 315 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 CLEC9AQ6UXN8 241 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 ZNF66Q6ZN08 573 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 CHSY1Q86X52 802 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 CNGA4Q8IV77 575 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 P3H2Q8IVL5 708 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 FSTL5Q8N475 847 aaPredicted RBP4.04□□□□□ -1.76
SPG11-206ENST00000558093 GALNT4Q8N4A0 578 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 C11orf44Q8N8P7 122 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 CCDC150Q8NCX0 1101 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 LRRC46Q96FV0 321 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 VPS50Q96JG6 964 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 FYTTD1Q96QD9 318 aaKnown RBP4.04□□□□□ -1.76
SPG11-206ENST00000558093 THAP7Q9BT49 309 aaPredicted RBP4.04□□□□□ -1.76
SPG11-206ENST00000558093 SLC29A3Q9BZD2 475 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 TRIM36Q9NQ86 728 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 NKX1-2Q9UD57 310 aaPredicted RBP4.04□□□□□ -1.76
SPG11-206ENST00000558093 STEAP1Q9UHE8 339 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 RIMKLBQ9ULI2 386 aa4.04□□□□□ -1.76
SPG11-206ENST00000558093 FNDC1Q4ZHG4 1894 aaPredicted RBP4.04□□□□□ -1.76
SPG11-206ENST00000558093 PRRT4C9JH25 899 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 PMM2O15305 246 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 RNF8O76064 485 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 CHRM5P08912 532 aaPredicted RBP4.03□□□□□ -1.76
SPG11-206ENST00000558093 TXNL4AP83876 142 aaKnown RBP4.03□□□□□ -1.76
SPG11-206ENST00000558093 LMAN2Q12907 356 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 FOXF2Q12947 444 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 FAM187BQ17R55 369 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 KLHDC7AQ5VTJ3 777 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 MIS18BP1Q6P0N0 1132 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 TMEM65Q6PI78 240 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 KSR2Q6VAB6 950 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 RITA1Q96K30 269 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 CCDC17Q96LX7 622 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 C5orf34Q96MH7 638 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 SARGQ9BW04 601 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 SEMA4CQ9C0C4 833 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 SLC25A32Q9H2D1 315 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 MGAT4CQ9UBM8 478 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 DKK4Q9UBT3 224 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 FER1L4A9Z1Z3 1794 aa4.03□□□□□ -1.76
SPG11-206ENST00000558093 BTBD19C9JJ37 291 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 TMEM232C9JQI7 657 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 AGPSO00116 658 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 PPP6CO00743 305 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 SPRY2O43597 315 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 A1BGP04217 495 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 CELA2AP08217 269 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 MYL3P08590 195 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 NBPF7P0C2Y1 421 aaPredicted RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 PRR35P0CG20 571 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 ARHGAP25P42331 645 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 PIK3CBP42338 1070 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 STT3AP46977 705 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 DIO1P49895 249 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 EIF4A1P60842 406 aaKnown RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 ZNF543Q08ER8 600 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 ZNF268Q14587 947 aaPredicted RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 MTX3Q5HYI7 312 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 CC2D1BQ5T0F9 858 aaKnown RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 BEND5Q7L4P6 421 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 BCDIN3DQ7Z5W3 292 aaKnown RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 YTHDF3Q7Z739 585 aaKnown RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 ATP11CQ8NB49 1132 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 MAFAQ8NHW3 353 aaPredicted RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 ADAMTS18Q8TE60 1221 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 SH2D3AQ9BRG2 576 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 MAGEB5Q9BZ81 275 aa4.02□□□□□ -1.77
SPG11-206ENST00000558093 RGS17Q9UGC6 210 aaPredicted RBP4.02□□□□□ -1.77
SPG11-206ENST00000558093 TTBK1Q5TCY1 1321 aaPredicted RBP4.01□□□□□ -1.77
SPG11-206ENST00000558093 DNAJC9-AS1A6NH13 148 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 CGB1A6NKQ9 187 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 A8MVJ9 347 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 APAF1O14727 1248 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 APOL1O14791 398 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 CCNT2O60583 730 aaKnown RBP4.01□□□□□ -1.77
SPG11-206ENST00000558093 MT-CO3P00414 261 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 TUBB4AP04350 444 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 KRT18P05783 430 aaKnown RBP4.01□□□□□ -1.77
SPG11-206ENST00000558093 TMEM225BP0DP42 221 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 MYL4P12829 197 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 TRIM27P14373 513 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 IDEP14735 1019 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 KELP23276 732 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 ADRA1DP25100 572 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 ATICP31939 592 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 PRIM2P49643 509 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 HTRA4P83105 476 aaPredicted RBP4.01□□□□□ -1.77
SPG11-206ENST00000558093 GPS1Q13098 491 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 HLTFQ14527 1009 aaKnown RBP eCLIP4.01□□□□□ -1.77
SPG11-206ENST00000558093 C4orf46Q504U0 113 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 CEP78Q5JTW2 689 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 MANEALQ5VSG8 457 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 CRTC1Q6UUV9 634 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 CATSPERGQ6ZRH7 1159 aa4.01□□□□□ -1.77
SPG11-206ENST00000558093 DCDC5Q6ZRR9 648 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms