RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	EDARADD	Q8WWZ3	215 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	TTC9	Q92623	222 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	SMARCD2	Q92925	531 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	CCDC47	Q96A33	483 aa	Known RBP	8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	MCRS1	Q96EZ8	462 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	CCDC34	Q96HJ3	373 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	HPDL	Q96IR7	371 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	SHD	Q96IW2	340 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	FAM84A	Q96KN4	292 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	FNBP1	Q96RU3	617 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	PKMYT1	Q99640	499 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	SEPT5	Q99719	369 aa	Predicted RBP	8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	ACBD6	Q9BR61	282 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	BHLHE41	Q9C0J9	482 aa	Predicted RBP	8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	KCTD10	Q9H3F6	313 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	TBC1D17	Q9HA65	648 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	TRPV4	Q9HBA0	871 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	ZFP14	Q9HCL3	533 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	DDX43	Q9NXZ2	648 aa	Known RBP	8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	ZMYM5	Q9UJ78	669 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	SNX9	Q9Y5X1	595 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	MYOF	Q9NZM1	2061 aa		8.22	□□□□□ -1.09
SNHG1-223	ENST00000545440	FAM186A	A6NE01	2351 aa		8.21	□□□□□ -1.09
SNHG1-223	ENST00000545440	EML5	Q05BV3	1969 aa		8.21	□□□□□ -1.09
SNHG1-223	ENST00000545440	RALGAPA1	Q6GYQ0	2036 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440		A0A096LPE4	126 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440		A0A1W2PPZ6	126 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PDXK	O00764	312 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	EXOC3	O60645	756 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	SOAT2	O75908	522 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	RHOBTB3	O94955	611 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	KIF20A	O95235	890 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	RPN1	P04843	607 aa	Known RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	HAPLN1	P10915	354 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PSMC3	P17980	439 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	TNNI1	P19237	187 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	CDC25C	P30307	473 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	STARD6	P59095	220 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	GPC5	P78333	572 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	NUCB2	P80303	420 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	ATP11A	P98196	1134 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PRKCQ	Q04759	706 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PWP1	Q13610	501 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	TEAD2	Q15562	447 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	MLF2	Q15773	248 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	SOWAHA	Q2M3V2	549 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	MGAT5B	Q3V5L5	792 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	CFAP221	Q4G0U5	840 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	RNFT1	Q5M7Z0	435 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PERM1	Q5SV97	790 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	TANGO2	Q6ICL3	276 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	KRBA2	Q6ZNG9	492 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	TRAPPC11	Q7Z392	1133 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	LRRTM3	Q86VH5	581 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	ST13P5	Q8NFI4	369 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PJA1	Q8NG27	643 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	DEPDC1B	Q8WUY9	529 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	E2F7	Q96AV8	911 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	CCDC127	Q96BQ5	260 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	FUBP3	Q96I24	572 aa	Known RBP eCLIP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	GCNA	Q96QF7	691 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	LPIN3	Q9BQK8	851 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	DDX23	Q9BUQ8	820 aa	Known RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	GOLPH3L	Q9H4A5	285 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	SLITRK6	Q9H5Y7	841 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	ZNF334	Q9HCZ1	680 aa	Predicted RBP	8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	PCDHB5	Q9Y5E4	795 aa		8.21	□□□□□ -1.1
SNHG1-223	ENST00000545440	MAPK13	O15264	365 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	TACC1	O75410	805 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	ZNF202	O95125	648 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	NR3C1	P04150	777 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	GJA1	P17302	382 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	WARS	P23381	471 aa	Known RBP	8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	ACAT1	P24752	427 aa	Known RBP	8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	GABRR2	P28476	465 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	ATIC	P31939	592 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	AP3M2	P53677	418 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	SNW1	Q13573	536 aa	Known RBP	8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	KCNB1	Q14721	858 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	MAPRE1	Q15691	268 aa	Known RBP	8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	NFIL3	Q16649	462 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	ARHGAP15	Q53QZ3	475 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	SCARA3	Q6AZY7	606 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	VIT	Q6UXI7	678 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	GAREM2	Q75VX8	874 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	OSTM1	Q86WC4	334 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	NUDT8	Q8WV74	236 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	KBTBD7	Q8WVZ9	684 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	SYAP1	Q96A49	352 aa	Predicted RBP	8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	ZSWIM3	Q96MP5	696 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	SYT15	Q9BQS2	421 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	TRMT61B	Q9BVS5	477 aa	Known RBP	8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	OSBPL6	Q9BZF3	934 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	PLA2G2F	Q9BZM2	168 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	LACRT	Q9GZZ8	138 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	TRPV5	Q9NQA5	729 aa		8.2	□□□□□ -1.1
SNHG1-223	ENST00000545440	TMLHE	Q9NVH6	421 aa		8.2	□□□□□ -1.1

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms