RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 CYLDQ9NQC7 956 aa16.53■□□□□ 0.24
VPS33A-206ENST00000542310 TLR8Q9NR97 1041 aaKnown RBP16.53■□□□□ 0.24
VPS33A-206ENST00000542310 FAM49BQ9NUQ9 324 aa16.53■□□□□ 0.24
VPS33A-206ENST00000542310 SCML2Q9UQR0 700 aa16.53■□□□□ 0.24
VPS33A-206ENST00000542310 SH3BP1Q9Y3L3 701 aa16.53■□□□□ 0.24
VPS33A-206ENST00000542310 PCDHGA5Q9Y5G8 931 aa16.53■□□□□ 0.24
VPS33A-206ENST00000542310 K7EQS6 105 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 HOXC11O43248 304 aaPredicted RBP16.52■□□□□ 0.24
VPS33A-206ENST00000542310 TLR5O60602 858 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 BEST1O76090 585 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 EPB41P11171 864 aaKnown RBP16.52■□□□□ 0.24
VPS33A-206ENST00000542310 HOXC13P31276 330 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 MXI1P50539 228 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 MRPS21P82921 87 aaKnown RBP16.52■□□□□ 0.24
VPS33A-206ENST00000542310 ORC1Q13415 861 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 PREPLQ4J6C6 727 aaPredicted RBP16.52■□□□□ 0.24
VPS33A-206ENST00000542310 C11orf74Q86VG3 221 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 C12orf29Q8N999 325 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 GSDMAQ96QA5 445 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 TWNKQ96RR1 684 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 PNKPQ96T60 521 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 NACA2Q9H009 215 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 CCSER2Q9H7U1 834 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 MMP17Q9ULZ9 603 aa16.52■□□□□ 0.24
VPS33A-206ENST00000542310 NUP205Q92621 2012 aa16.52■□□□□ 0.23
VPS33A-206ENST00000542310 HHLA1C9JL84 531 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 CETN3O15182 167 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 SLC16A3O15427 465 aaKnown RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 APODP05090 189 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 ADORA2BP29275 332 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 PXNP49023 591 aaPredicted RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 ATXN1P54253 815 aaKnown RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 NUCB2P80303 420 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 GAD2Q05329 585 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 GOLGA8FQ08AF8 430 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 GOLGA8DPQ0D2H9 430 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 ZNF658Q5TYW1 1059 aaPredicted RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 KLHDC10Q6PID8 442 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 RHBDF2Q6PJF5 856 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 RASSF3Q86WH2 238 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 ZC3H3Q8IXZ2 948 aaKnown RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 FBXL13Q8NEE6 735 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 TSTD1Q8NFU3 115 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 CYFIP2Q96F07 1278 aa16.51■□□□□ 0.23
VPS33A-206ENST00000542310 CHORDC1Q9UHD1 332 aaPredicted RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.51■□□□□ 0.23
VPS33A-206ENST00000542310 MYO18AQ92614 2054 aaKnown RBP16.5■□□□□ 0.23
VPS33A-206ENST00000542310 A0A0A0MRY4 1105 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 MED19A0JLT2 244 aaPredicted RBP16.5■□□□□ 0.23
VPS33A-206ENST00000542310 SLC30A4O14863 429 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 KAT7O95251 611 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 CHRM1P11229 460 aaPredicted RBP16.5■□□□□ 0.23
VPS33A-206ENST00000542310 GRIA2P42262 883 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 PSEN1P49768 467 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 PNOCQ13519 176 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 GPRIN1Q7Z2K8 1008 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 KBTBD6Q86V97 674 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 C12orf40Q86WS4 652 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 ETFBKMTQ8IXQ9 262 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 SMYD4Q8IYR2 804 aaPredicted RBP16.5■□□□□ 0.23
VPS33A-206ENST00000542310 ZNF276Q8N554 614 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 SPATA20Q8TB22 786 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 WHAMMQ8TF30 809 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 CNOT6LQ96LI5 555 aaKnown RBP16.5■□□□□ 0.23
VPS33A-206ENST00000542310 TSG101Q99816 390 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 MMRN2Q9H8L6 949 aa16.5■□□□□ 0.23
VPS33A-206ENST00000542310 HOOK1Q9UJC3 728 aaKnown RBP16.5■□□□□ 0.23
VPS33A-206ENST00000542310 GOLGA6L4A6NEF3 574 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 SMC2O95347 1197 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 CD58P19256 250 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 PRCPP42785 496 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 TNFRSF4P43489 277 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 DGKEP52429 567 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 LIMK1P53667 647 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 SEC13P55735 322 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 LRRC63Q05C16 580 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 ELF2Q15723 593 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 PLK5Q496M5 336 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 LY6G5CQ5SRR4 150 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 BTBD8Q5XKL5 378 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 HTR3DQ70Z44 454 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 CCDC186Q7Z3E2 898 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 TADA2BQ86TJ2 420 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 BBS7Q8IWZ6 715 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 PHTF2Q8N3S3 785 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 ENGASEQ8NFI3 743 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 KCNV2Q8TDN2 545 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 TIGD1Q96MW7 591 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 CDK5RAP1Q96SZ6 601 aaKnown RBP16.49■□□□□ 0.23
VPS33A-206ENST00000542310 DUSP16Q9BY84 665 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 ARHGEF4Q9NR80 690 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 SPHK2Q9NRA0 654 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 POLR3BQ9NW08 1133 aaPredicted RBP16.49■□□□□ 0.23
VPS33A-206ENST00000542310 RAB20Q9NX57 234 aa16.49■□□□□ 0.23
VPS33A-206ENST00000542310 LSM7Q9UK45 103 aaKnown RBP16.49■□□□□ 0.23
VPS33A-206ENST00000542310 THADAQ6YHU6 1953 aa16.48■□□□□ 0.23
VPS33A-206ENST00000542310 TNRC6BQ9UPQ9 1833 aaKnown RBP16.48■□□□□ 0.23
VPS33A-206ENST00000542310 SDK1Q7Z5N4 2213 aa16.48■□□□□ 0.23
VPS33A-206ENST00000542310 SCAMP3O14828 347 aaKnown RBP16.48■□□□□ 0.23
VPS33A-206ENST00000542310 CYP26A1O43174 497 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms