RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MCRS1Q96EZ8 462 aa12.5□□□□□ -0.41
CUX1-210ENST00000497815 CCDC42Q96M95 316 aa12.5□□□□□ -0.41
CUX1-210ENST00000497815 PANX2Q96RD6 677 aa12.5□□□□□ -0.41
CUX1-210ENST00000497815 NHEJ1Q9H9Q4 299 aaPredicted RBP12.5□□□□□ -0.41
CUX1-210ENST00000497815 NMUR1Q9HB89 426 aa12.5□□□□□ -0.41
CUX1-210ENST00000497815 AVENQ9NQS1 362 aaPredicted RBP12.5□□□□□ -0.41
CUX1-210ENST00000497815 CNGB3Q9NQW8 809 aa12.5□□□□□ -0.41
CUX1-210ENST00000497815 TLR8Q9NR97 1041 aaKnown RBP12.5□□□□□ -0.41
CUX1-210ENST00000497815 ADAM22Q9P0K1 906 aa12.5□□□□□ -0.41
CUX1-210ENST00000497815 C2orf16Q68DN1 1984 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 FAM92AA1XBS5 289 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 C2orf78A6NCI8 922 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 GRAP2O75791 330 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 FBXO21O94952 628 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 FTLP02792 175 aaPredicted RBP12.49□□□□□ -0.41
CUX1-210ENST00000497815 MMP8P22894 467 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 GSDMDP57764 484 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 MRPS5P82675 430 aaKnown RBP12.49□□□□□ -0.41
CUX1-210ENST00000497815 TAF5Q15542 800 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 SMAD2Q15796 467 aaKnown RBP12.49□□□□□ -0.41
CUX1-210ENST00000497815 AAK1Q2M2I8 961 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 PUS10Q3MIT2 529 aaKnown RBP12.49□□□□□ -0.41
CUX1-210ENST00000497815 CCDC122Q5T0U0 273 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 PM20D1Q6GTS8 502 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 BHLHA9Q7RTU4 235 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 SCD5Q86SK9 330 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 MON1AQ86VX9 555 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 NPAS3Q8IXF0 933 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 MAB21L3Q8N8X9 362 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 ST13P5Q8NFI4 369 aaPredicted RBP12.49□□□□□ -0.41
CUX1-210ENST00000497815 OVCA2Q8WZ82 227 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 EDEM1Q92611 657 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 GOLGA1Q92805 767 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 FGF13Q92913 245 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 FAM149B1Q96BN6 582 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 PIWIL1Q96J94 861 aaKnown RBP12.49□□□□□ -0.41
CUX1-210ENST00000497815 RPGRIP1Q96KN7 1286 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 ZSWIM3Q96MP5 696 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 MYADMQ96S97 322 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 NACA2Q9H009 215 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 CCSER2Q9H7U1 834 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 CYLDQ9NQC7 956 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 SPTLC3Q9NUV7 552 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 OSER1Q9NX31 292 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 NUDT5Q9UKK9 219 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 FAM50BQ9Y247 325 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 MYH10P35580 1976 aa12.49□□□□□ -0.41
CUX1-210ENST00000497815 SSU72P8A0A1W2PR75 194 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 SOWAHDA6NJG2 315 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 ATMINO43313 823 aaPredicted RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 RTN2O75298 545 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 LTFP02788 710 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 CALB1P05937 261 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 ZDHHC11BP0C7U3 371 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 RARGP13631 454 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 GABRB2P47870 512 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 PPP3CCP48454 512 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 RNASE9P60153 205 aaKnown RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 CDK17Q00537 523 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 SLC6A3Q01959 620 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 HECTD3Q5T447 861 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 FAM102AQ5T9C2 384 aaPredicted RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 BSPRYQ5W0U4 402 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 BTBD8Q5XKL5 378 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 ALKBH5Q6P6C2 394 aaKnown RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 TOGARAM2Q6ZUX3 1019 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 MON1BQ7L1V2 547 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 RSRC2Q7L4I2 434 aaKnown RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 XYLT1Q86Y38 959 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 PHF13Q86YI8 300 aaPredicted RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 MCOLN2Q8IZK6 566 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 ARHGAP18Q8N392 663 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 TTC16Q8NEE8 873 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 IRGQQ8WZA9 623 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 SLC22A12Q96S37 553 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 CYP2S1Q96SQ9 504 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 BAG1Q99933 345 aaPredicted RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 SLC46A2Q9BY10 475 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 SMG9Q9H0W8 520 aaKnown RBP12.48□□□□□ -0.41
CUX1-210ENST00000497815 TASP1Q9H6P5 420 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 CDH7Q9ULB5 785 aa12.48□□□□□ -0.41
CUX1-210ENST00000497815 MYO16Q9Y6X6 1858 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 NCANO14594 1321 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 TRAV19A0A0A6YYK7 116 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 MDM4O15151 490 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 SART1O43290 800 aaKnown RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 TLR5O60602 858 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 GJB6O95452 261 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 TBX18O95935 607 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 PTMAP06454 111 aaKnown RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 CKMP06732 381 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 RALAP11233 206 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 GZMAP12544 262 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 ABCB4P21439 1286 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 RRM1P23921 792 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 PTP4A2Q12974 167 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 MTF1Q14872 753 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 SLC18A3Q16572 532 aa12.47□□□□□ -0.41
CUX1-210ENST00000497815 ASTE1Q2TB18 679 aaPredicted RBP12.47□□□□□ -0.41
CUX1-210ENST00000497815 C10orf120Q5SQS8 335 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms