RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CFHR3Q02985 330 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 PTCHD3Q3KNS1 767 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 TMEM240Q5SV17 173 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 RNF187Q5TA31 235 aaPredicted RBP4.84□□□□□ -1.63
VPS50-219ENST00000495039 ZNF793Q6ZN11 406 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 IGFBPL1Q8WX77 278 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 P2RX7Q99572 595 aaKnown RBP4.84□□□□□ -1.63
VPS50-219ENST00000495039 TMEM204Q9BSN7 226 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 VN1R3Q9BXE9 311 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 MS4A7Q9GZW8 240 aaPredicted RBP4.84□□□□□ -1.63
VPS50-219ENST00000495039 ARMT1Q9H993 441 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 MGAT4CQ9UBM8 478 aa4.84□□□□□ -1.63
VPS50-219ENST00000495039 SPRY2O43597 315 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 SLC28A2O43868 658 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 AKAP5P24588 427 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 B4GALNT1Q00973 533 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 MANEAQ5SRI9 462 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 DCAF12L1Q5VU92 463 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 ZNF783Q6ZMS7 281 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 B4GALNT2Q8NHY0 566 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 RAPGEF4Q8WZA2 1011 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 HSPBAP1Q96EW2 488 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 HIC2Q96JB3 615 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 SMAD5Q99717 465 aaKnown RBP4.83□□□□□ -1.64
VPS50-219ENST00000495039 TRIM36Q9NQ86 728 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 NOTCH4Q99466 2003 aa4.83□□□□□ -1.64
VPS50-219ENST00000495039 CLIC1O00299 241 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 SYF2O95926 243 aaKnown RBP4.82□□□□□ -1.64
VPS50-219ENST00000495039 CD63P08962 238 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 SLC14A1Q13336 389 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 MFSD13AQ14CX5 517 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 NGDNQ8NEJ9 315 aaKnown RBP4.82□□□□□ -1.64
VPS50-219ENST00000495039 PLBD2Q8NHP8 589 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 DNAJB14Q8TBM8 379 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 KBTBD7Q8WVZ9 684 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 SLC25A28Q96A46 364 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 MAP3K14Q99558 947 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 CGRRF1Q99675 332 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 TMEM8AQ9HCN3 771 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 SELENONQ9NZV5 590 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 MDFICQ9P1T7 246 aa4.82□□□□□ -1.64
VPS50-219ENST00000495039 TTBK1Q5TCY1 1321 aaPredicted RBP4.81□□□□□ -1.64
VPS50-219ENST00000495039 ALDH2P05091 517 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 IL6STP40189 918 aaPredicted RBP4.81□□□□□ -1.64
VPS50-219ENST00000495039 TIRAPP58753 221 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 RAB1AP62820 205 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 CTBP1Q13363 440 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 FGL2Q14314 439 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 PFKFB3Q16875 520 aaPredicted RBP4.81□□□□□ -1.64
VPS50-219ENST00000495039 MPP5Q8N3R9 675 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 PRPF38AQ8NAV1 312 aaKnown RBP4.81□□□□□ -1.64
VPS50-219ENST00000495039 ZNF479Q96JC4 524 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 TRIM54Q9BYV2 358 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 CDY1Q9Y6F8 540 aa4.81□□□□□ -1.64
VPS50-219ENST00000495039 BTN3A1O00481 513 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 INPPL1O15357 1258 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 SRGAP2O75044 1071 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 FGF2P09038 288 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 VCAM1P19320 739 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 UQCRC1P31930 480 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 ARFIP2P53365 341 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 ASIC2Q16515 512 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 FAM110CQ1W6H9 321 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 PRTGQ2VWP7 1150 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 C12orf76Q8N812 135 aaPredicted RBP4.8□□□□□ -1.64
VPS50-219ENST00000495039 OR6B3Q8NGW1 331 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 WIPF2Q8TF74 440 aaPredicted RBP4.8□□□□□ -1.64
VPS50-219ENST00000495039 MEIS3Q99687 375 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 TRIM5Q9C035 493 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 STAP2Q9UGK3 403 aa4.8□□□□□ -1.64
VPS50-219ENST00000495039 WASHC2CQ9Y4E1 1318 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 NGFRP08138 427 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 PGGT1BP53609 377 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 TIAL1Q01085 375 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS50-219ENST00000495039 RAB32Q13637 225 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 HPS3Q969F9 1004 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 EDC3Q96F86 508 aaKnown RBP4.79□□□□□ -1.64
VPS50-219ENST00000495039 WDYHV1Q96HA8 205 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 FAM84BQ96KN1 310 aaPredicted RBP4.79□□□□□ -1.64
VPS50-219ENST00000495039 ASPSCR1Q9BZE9 553 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 DECR2Q9NUI1 292 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 TMEM45AQ9NWC5 275 aa4.79□□□□□ -1.64
VPS50-219ENST00000495039 A0A088AWK7 358 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 ANKRD62A6NC57 917 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 CTIFO43310 598 aaKnown RBP4.78□□□□□ -1.64
VPS50-219ENST00000495039 ALDH7A1P49419 539 aaKnown RBP4.78□□□□□ -1.64
VPS50-219ENST00000495039 SLC13A2Q13183 592 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 INSCQ1MX18 579 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 CACHD1Q5VU97 1274 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 B4GALNT4Q76KP1 1039 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 GRAMD1CQ8IYS0 662 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 C1GALT1C1Q96EU7 318 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 NUP88Q99567 741 aaPredicted RBP4.78□□□□□ -1.64
VPS50-219ENST00000495039 SCNM1Q9BWG6 230 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 DPH1Q9BZG8 443 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 XPNPEP3Q9NQH7 507 aa4.78□□□□□ -1.64
VPS50-219ENST00000495039 LUC7L2Q9Y383 392 aaKnown RBP4.78□□□□□ -1.64
VPS50-219ENST00000495039 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.77□□□□□ -1.65
VPS50-219ENST00000495039 C2CD4BA6NLJ0 364 aa4.77□□□□□ -1.65
VPS50-219ENST00000495039 EXOC5O00471 708 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms