RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 FAM35AQ86V20 835 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 NELFCDQ8IXH7 590 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 TRIML1Q8N9V2 468 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 TERB1Q8NA31 727 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 B3GALNT2Q8NCR0 500 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 BHMTQ93088 406 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 SLC32A1Q9H598 525 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 HMGXB4Q9UGU5 601 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 NUDT5Q9UKK9 219 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 SLC6A14Q9UN76 642 aa12.72□□□□□ -0.37
HDAC6-219ENST00000476625 SRPRBQ9Y5M8 271 aaKnown RBP12.72□□□□□ -0.37
HDAC6-219ENST00000476625 PCNX2A6NKB5 2137 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 FAM208BQ5VWN6 2430 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 NBEAQ8NFP9 2946 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 ZNF233A6NK53 670 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 A8MXQ7 604 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 PRRT4C9JH25 899 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 TGFB1I1O43294 461 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 GREM1O60565 184 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 CCDC130P13994 396 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 TNNI1P19237 187 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 YWHAQP27348 245 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 EIF2DP41214 584 aaKnown RBP12.71□□□□□ -0.37
HDAC6-219ENST00000476625 TNFRSF4P43489 277 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 PDE6CP51160 858 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 ATXN3P54252 364 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-219ENST00000476625 GAD2Q05329 585 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 GFPT1Q06210 699 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-219ENST00000476625 SCAPQ12770 1279 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 ACAP1Q15027 740 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 DUOXA1Q1HG43 343 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 DUOXA2Q1HG44 320 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 WDR72Q3MJ13 1102 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 TPGS1Q6ZTW0 290 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 GPRIN1Q7Z2K8 1008 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 RAB44Q7Z6P3 723 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-219ENST00000476625 CACUL1Q86Y37 369 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 WDR49Q8IV35 697 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 NUP93Q8N1F7 819 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 SPRYD3Q8NCJ5 442 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 ZMIZ2Q8NF64 920 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 JAKMIP2Q96AA8 810 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 SLITRK1Q96PX8 696 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 USP28Q96RU2 1077 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 CGRRF1Q99675 332 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 MED10Q9BTT4 135 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 XYLT2Q9H1B5 865 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 IL21RQ9HBE5 538 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.71□□□□□ -0.371e-15■■■■■ 67.3
HDAC6-219ENST00000476625 SPHK2Q9NRA0 654 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 FOXD4L1Q9NU39 408 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 CACNA2D2Q9NY47 1150 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 SH3BP1Q9Y3L3 701 aa12.71□□□□□ -0.37
HDAC6-219ENST00000476625 CACNA1EQ15878 2313 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 E2F8A0AVK6 867 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 NEDD8-MDP1E9PL57 170 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 ARHGAP33O14559 1287 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 SLC9A3R1O14745 358 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 HOXC11O43248 304 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 AP5Z1O43299 807 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 OPHN1O60890 802 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 ZIC2O95409 532 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 BMP15O95972 392 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 SERPINF2P08697 491 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 SLC5A3P53794 718 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 TNNC1P63316 161 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 CYP24A1Q07973 514 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 MAPRE1Q15691 268 aaKnown RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 SNRNP35Q16560 246 aaKnown RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 COL28A1Q2UY09 1125 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 PROSER1Q86XN7 944 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 HDDC3Q8N4P3 179 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 CCDC26Q8TAB7 109 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 MDM1Q8TC05 714 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 IPO4Q8TEX9 1081 aaKnown RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 SMOQ99835 787 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 ELOVL4Q9GZR5 314 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 DNAJC17Q9NVM6 304 aaKnown RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 OSER1Q9NX31 292 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 PLK2Q9NYY3 685 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 DEC1Q9P2X7 70 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 R3HCC1Q9Y3T6 440 aaKnown RBP12.7□□□□□ -0.38
HDAC6-219ENST00000476625 SLCO1B1Q9Y6L6 691 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 GON4LQ3T8J9 2241 aa12.7□□□□□ -0.38
HDAC6-219ENST00000476625 ZFYVE26Q68DK2 2539 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 PKD1L2Q7Z442 2459 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 DMXL2Q8TDJ6 3036 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 TACC1O75410 805 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 GJB3O75712 270 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 CLSTN1O94985 981 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 FTH1P19P0C7X4 201 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 PFKLP17858 780 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 NTSR1P30989 418 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 PLEKHG6Q3KR16 790 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 HECTD3Q5T447 861 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 KIAA1324Q6UXG2 1013 aaKnown RBP12.69□□□□□ -0.38
HDAC6-219ENST00000476625 EPM2AIP1Q7L775 607 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-219ENST00000476625 ACOT1Q86TX2 421 aa12.69□□□□□ -0.38
HDAC6-219ENST00000476625 SLCO6A1Q86UG4 719 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms