RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 NAV1Q8NEY1 1877 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 MYH6P13533 1939 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TBC1D12O60347 775 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 JUNP05412 331 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CNTFP26441 200 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 MXI1P50539 228 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 NOMO1Q15155 1222 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 KLHL35Q6PF15 583 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 MYCT1Q8N699 235 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 FBXO27Q8NI29 283 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 COA7Q96BR5 231 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 VPS50Q96JG6 964 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PYGLP06737 847 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MYL3P08590 195 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 FGFR4P22455 802 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 IL4RP24394 825 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 PTGER2P43116 358 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 PHKA2P46019 1235 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MRPS5P82675 430 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 BST1Q10588 318 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 OXA1LQ15070 435 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MBLAC2Q68D91 279 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 POTEHQ6S545 545 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HS2ST1Q7LGA3 356 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TTC7BQ86TV6 843 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM74Q86UV6 250 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM73Q86UV7 250 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 NLGN1Q8N2Q7 840 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 KIAA1958Q8N8K9 716 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 RIC8BQ9NVN3 520 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CD300AQ9UGN4 299 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CREB3O43889 395 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CSPG5O95196 566 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HSPA13P48723 471 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TAP1Q03518 808 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 IZUMO3Q5VZ72 239 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 USP17L2Q6R6M4 530 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MAVSQ7Z434 540 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ABI1Q8IZP0 508 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 LILRA2Q8N149 483 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 EEF2KMTQ96G04 330 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 FTHL17Q9BXU8 183 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TXNDC16Q9P2K2 825 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HECAQ9UBI9 543 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 SNX9Q9Y5X1 595 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 USP3Q9Y6I4 520 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CHADO15335 359 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 KRT19P08727 400 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 POTEGQ6S5H5 508 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 RCOR2Q8IZ40 523 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 NACA2Q9H009 215 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 SDCBP2Q9H190 292 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 E5RJQ4 531 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 FXYD1O00168 92 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TADA2AO75478 443 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 FGF3P11487 239 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ATP2B4P23634 1241 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CRHR1P34998 444 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ARCN1P48444 511 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ERFEQ4G0M1 354 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 IL23RQ5VWK5 629 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ZFP1Q6P2D0 407 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ERI1Q8IV48 349 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 RTKN2Q8IZC4 609 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CENPIQ92674 756 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 KHSRPQ92945 711 aaKnown RBP eCLIP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 VMP1Q96GC9 406 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HGH1Q9BTY7 390 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 DDX18Q9NVP1 670 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 DUS2Q9NX74 493 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HESX1Q9UBX0 185 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 POMPQ9Y244 141 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HCN4Q9Y3Q4 1203 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TCRBV3S1A0A5B6 114 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 RNF103O00237 685 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ITM2AO43736 263 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 SPOPO43791 374 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 HDAC4P56524 1084 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MYBPC1Q00872 1141 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ADCY1Q08828 1119 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MSS51Q4VC12 460 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 FAM102BQ5T8I3 360 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 SH3BP5LQ7L8J4 393 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ADAT2Q7Z6V5 191 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CAND1Q86VP6 1230 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 TSPEARQ8WU66 669 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 FGD4Q96M96 766 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 GPATCH1Q9BRR8 931 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 C20orf27Q9GZN8 174 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 PSTPIP2Q9H939 334 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ANGPTL2Q9UKU9 493 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 PPM1HQ9ULR3 514 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 G3BP2Q9UN86 482 aaKnown RBP5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF148Q9UQR1 794 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 DMTF1Q9Y222 760 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 MYH1P12882 1939 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 CBFA2T3O75081 653 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF12P17014 697 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 KCNJ1P48048 391 aa5.56□□□□□ -1.52
SYNE1-220ENST00000471834 AP3M2P53677 418 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms