RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PPP6R3Q5H9R7 873 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 FAXCQ5TGI0 409 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 DPP9Q86TI2 863 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 MAP7D3Q8IWC1 876 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 TTC39CQ8N584 583 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 C7orf31Q8N865 590 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 GBP7Q8N8V2 638 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 OR6B3Q8NGW1 331 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 PCDH19Q8TAB3 1148 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 LRRC8CQ8TDW0 803 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 CLEC4CQ8WTT0 213 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ZC3H15Q8WU90 426 aaKnown RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 PLCD4Q9BRC7 762 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 SNRNP25Q9BV90 132 aaKnown RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 SLC4A5Q9BY07 1137 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 PCDH18Q9HCL0 1135 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 RAB6BQ9NRW1 208 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 FETUBQ9UGM5 382 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 STARD13Q9Y3M8 1113 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 DNAH12Q6ZR08 3092 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 TCRBV9S1A1TA0A576 114 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 IGF2BP3O00425 579 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 EDF1O60869 148 aaKnown RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ATP6V1G2O95670 118 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 NQO1P15559 274 aaKnown RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 YBX3P16989 372 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ATXN1P54253 815 aaKnown RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 HDAC4P56524 1084 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 BCAR1P56945 870 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ACVR2BQ13705 512 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 PDK2Q15119 407 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 STILQ15468 1287 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ZBTB6Q15916 424 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 KBTBD12Q3ZCT8 623 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 DUSP28Q4G0W2 176 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 DPY19L2Q6NUT2 758 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 RGS9BPQ6ZS82 235 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 CATSPER4Q7RTX7 472 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 TMEM110Q86TL2 294 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF410Q86VK4 478 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 OR6J1Q8NGC5 347 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 TCP10LQ8TDR4 215 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF75CPQ92670 426 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 KLHL29Q96CT2 875 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 SNX27Q96L92 541 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 OSMRQ99650 979 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 APOL6Q9BWW8 343 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ADAMTS10Q9H324 1103 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 SLC17A7Q9P2U7 560 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 TEX264Q9Y6I9 313 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CFAP73A6NFT4 308 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 SMAPO00193 183 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 DPYSL4O14531 572 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 APOL1O14791 398 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 STRNO43815 780 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 PDGFRBP09619 1106 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 AKAP5P24588 427 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 YWHAGP61981 247 aaKnown RBP eCLIP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 SOWAHAQ2M3V2 549 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 DCAF4L1Q3SXM0 396 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 SWT1Q5T5J6 900 aaKnown RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CCDC33Q8N5R6 958 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 MS4A4AQ96JQ5 239 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CYTH2Q99418 400 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 MYLK2Q9H1R3 596 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 NXF3Q9H4D5 531 aaKnown RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 PLEKHA5Q9HAU0 1116 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 BAIAP2L1Q9UHR4 511 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 A8MXQ7 604 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CHADO15335 359 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 GPR32O75388 356 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 ZWINTO95229 277 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CCDC130P13994 396 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 ATP2A2P16615 1042 aaKnown RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 LMO2P25791 158 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 GBP2P32456 591 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 DGKDQ16760 1214 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 SLC9A4Q6AI14 798 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 SLC27A1Q6PCB7 646 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 GPR142Q7Z601 462 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF467Q7Z7K2 595 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 PRPF39Q86UA1 669 aaKnown RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 BANPQ8N9N5 519 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CFAP36Q96G28 342 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 MAML3Q96JK9 1138 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 FAM124BQ9H5Z6 455 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 ALG13Q9NP73 1137 aaKnown RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 SSU72Q9NP77 194 aaKnown RBP9.31□□□□□ -0.92
SYNE1-217ENST00000466159 KLK14Q9P0G3 267 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 HESX1Q9UBX0 185 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CHKBQ9Y259 395 aa9.31□□□□□ -0.92
SYNE1-217ENST00000466159 CCL15-CCL14A0A0B4J2E2 113 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 FAM155BO75949 473 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 RECQL4O94761 1208 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ZBED1O96006 694 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 KRT16P08779 473 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 TGM2P21980 687 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 ADORA2BP29275 332 aa9.3□□□□□ -0.92
SYNE1-217ENST00000466159 YWHAZP63104 245 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms