RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 PARVAQ9NVD7 372 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 CLDND1Q9NY35 253 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 TRPM5Q9NZQ8 1165 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 CLEC1BQ9P126 229 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 REXO2Q9Y3B8 237 aaKnown RBP12.93□□□□□ -0.34
LINC00339-204ENST00000434233 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.92□□□□□ -0.34
LINC00339-204ENST00000434233 FAM170AA1A519 330 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 YJEFN3A6XGL0 299 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 E7ENQ6 273 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 PJA2O43164 708 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 LTFP02788 710 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 KRT3P12035 628 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 FOSL2P15408 326 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 ABCB4P21439 1286 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 LTBRP36941 435 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 VAV2P52735 878 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 YWHAZP63104 245 aaKnown RBP12.92□□□□□ -0.34
LINC00339-204ENST00000434233 MAMLD1Q13495 774 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 TCEAL1Q15170 157 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 RARS2Q5T160 578 aaKnown RBP12.92□□□□□ -0.34
LINC00339-204ENST00000434233 TMC5Q6UXY8 1006 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 SLC26A9Q7LBE3 791 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 BHLHA9Q7RTU4 235 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 SCD5Q86SK9 330 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 TMC8Q8IU68 726 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 HS6ST3Q8IZP7 471 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 MICALL1Q8N3F8 863 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 SMG7Q92540 1137 aaKnown RBP12.92□□□□□ -0.34
LINC00339-204ENST00000434233 NDRG1Q92597 394 aaKnown RBP12.92□□□□□ -0.34
LINC00339-204ENST00000434233 GOLGA1Q92805 767 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 CORO1BQ9BR76 489 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 TRIM62Q9BVG3 475 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 SELENOOQ9BVL4 669 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 ADAM7Q9H2U9 754 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 IL21Q9HBE4 155 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF334Q9HCZ1 680 aaPredicted RBP12.92□□□□□ -0.34
LINC00339-204ENST00000434233 ASAH2Q9NR71 780 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 ABCC13Q9NSE7 274 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 CLIC5Q9NZA1 410 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 MYO1AQ9UBC5 1043 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 TMEM59LQ9UK28 342 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 SCINQ9Y6U3 715 aa12.92□□□□□ -0.34
LINC00339-204ENST00000434233 SOBPA7XYQ1 873 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 BTNL10A8MVZ5 291 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 GOLGA8SH3BPF8 625 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF197O14709 1029 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 HSF2BPO75031 334 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 RHOP08100 348 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 CCDC175P0C221 793 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 RALAP11233 206 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 GABRR2P28476 465 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 CDC25CP30307 473 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 VASPP50552 380 aaPredicted RBP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 YWHAGP61981 247 aaKnown RBP eCLIP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 DLX2Q07687 328 aaPredicted RBP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 ATAT1Q5SQI0 421 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 PPP1R15BQ5SWA1 713 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 FAM102AQ5T9C2 384 aaPredicted RBP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 BSPRYQ5W0U4 402 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 BTBD8Q5XKL5 378 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 DNAJC24Q6P3W2 148 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF662Q6ZS27 426 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 GRASPQ7Z6J2 395 aaPredicted RBP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 PHLDB2Q86SQ0 1253 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 KIAA1328Q86T90 577 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 TMEM150AQ86TG1 271 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 RHOT2Q8IXI1 618 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 FEZF2Q8TBJ5 459 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 ARHGEF26Q96DR7 871 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 MSLNLQ96KJ4 702 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 DESI2Q9BSY9 194 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 POPDC2Q9HBU9 364 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 HCFC1R1Q9NWW0 138 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 GMIPQ9P107 970 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 UVRAGQ9P2Y5 699 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 DENND4CQ5VZ89 1909 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 DOCK6Q96HP0 2047 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 NOTCH4Q99466 2003 aa12.91□□□□□ -0.34
LINC00339-204ENST00000434233 LAMA2P24043 3122 aaKnown RBP12.91□□□□□ -0.34
LINC00339-204ENST00000434233 CHD7Q9P2D1 2997 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 A0A0A6YYK5 440 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-204ENST00000434233 A0A1W2PQH9 124 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF840PA6NDX5 716 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 TBX10O75333 385 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 FYNP06241 537 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 MYL4P12829 197 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 PFKLP17858 780 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 NOS2P35228 1153 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 KIF5AQ12840 1032 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 TAF5Q15542 800 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 CCDC85BQ15834 202 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-204ENST00000434233 PRSS36Q5K4E3 855 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 CES5AQ6NT32 575 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 EP400NLQ6ZTU2 488 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 HFE2Q6ZVN8 426 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 GAREM2Q75VX8 874 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 PDZD4Q76G19 769 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-204ENST00000434233 SLC35G2Q8TBE7 412 aa12.9□□□□□ -0.34
LINC00339-204ENST00000434233 FAM149B1Q96BN6 582 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms