RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 GABPB1Q06547 395 aaPredicted RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 PLD1Q13393 1074 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 HGSNATQ68CP4 663 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ANKS3Q6ZW76 656 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ITIH5Q86UX2 942 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 FAM35AQ86V20 835 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ACTRT1Q8TDG2 376 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ATXN7L3BQ96GX2 97 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 TBCBQ99426 244 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 VPS11Q9H270 941 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 REXO2Q9Y3B8 237 aaKnown RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 SIGLEC16A6NMB1 481 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 MTSS1O43312 755 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 CYP2F1P24903 491 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 OR1D2P34982 312 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ST8SIA6P61647 398 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 PSMD5Q16401 504 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 USP41Q3LFD5 358 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ERMARDQ5T6L9 678 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 DAB2IPQ5VWQ8 1189 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 APTXQ7Z2E3 356 aaKnown RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 TFAP2DQ7Z6R9 452 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 DDX53Q86TM3 631 aaKnown RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 CELF6Q96J87 481 aaKnown RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 ZIC5Q96T25 663 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ATXN3LQ9H3M9 355 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ZFATQ9P243 1243 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 CACNG4Q9UBN1 327 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 ZC3H7BQ9UGR2 993 aaKnown RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 MYO5AQ9Y4I1 1855 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 BCORQ6W2J9 1755 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 HMGB1P1B2RPK0 211 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 TLL1O43897 1013 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 CILPO75339 1184 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 ITGBL1O95965 494 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 ZNF865P0CJ78 1059 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 MAGOHP61326 146 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 KYNUQ16719 465 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 PTPN20Q4JDL3 420 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 TAF1BQ53T94 588 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 CTU1Q7Z7A3 348 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 DDI1Q8WTU0 396 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 EXT2Q93063 718 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 MLXIPLQ9NP71 852 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 RRN3Q9NYV6 651 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 KLHL14Q9P2G3 628 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 PCDHA3Q9Y5H8 950 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 COL5A3P25940 1745 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 O00370 1275 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 SCAMP3O14828 347 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 RTN3O95197 1032 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 NOS2P35228 1153 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 PAPOLAP51003 745 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 GYS2P54840 703 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 GKAP1Q5VSY0 366 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 NXNQ6DKJ4 435 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 PHF13Q86YI8 300 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 CACNA2D3Q8IZS8 1091 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 EMILIN2Q9BXX0 1053 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 B3GNT5Q9BYG0 378 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 CDHR5Q9HBB8 845 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 SLC4A7Q9Y6M7 1214 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 UBA6A0AVT1 1052 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 ARHGAP42A6NI28 874 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 COPEO14579 308 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 ZNF189O75820 626 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 ENDOD1O94919 500 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 TRUB2O95900 331 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 JCHAINP01591 159 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 AMPD1P23109 780 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 PPARGP37231 505 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 CTCFP49711 727 aaPredicted RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 DDR2Q16832 855 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 ATP13A4Q4VNC1 1196 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 CCDC38Q502W7 563 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 NUDT18Q6ZVK8 323 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 TMEM139Q8IV31 216 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 SLC25A41Q8N5S1 370 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 ATAD1Q8NBU5 361 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 ZNF516Q92618 1163 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 ARHGEF2Q92974 986 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 WNT8BQ93098 351 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 TTC17Q96AE7 1141 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 FBXL18Q96ME1 805 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 SERPINB11Q96P15 392 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 TTYH3Q9C0H2 523 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 SARS2Q9NP81 518 aaKnown RBP9.44□□□□□ -0.9
LIG4-202ENST00000405925 MARCH2Q9P0N8 246 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 L1RE1Q9UN81 338 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 COQ4Q9Y3A0 265 aa9.44□□□□□ -0.9
LIG4-202ENST00000405925 A0A1W2PQ45 241 aaPredicted RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 A0A1W2PQY0 241 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 MYADML2A6NDP7 307 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 ZNF263O14978 683 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 PARNO95453 639 aaKnown RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 RARAP10276 462 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 ACRP10323 421 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 MARCKSL1P49006 195 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 COPS2P61201 443 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 RABGAP1LQ5R372 815 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms