RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GALNT4Q8N4A0 578 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 SLC35B2Q8TB61 432 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 TMIGD2Q96BF3 282 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 DCUN1D1Q96GG9 259 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 C1orf112Q9NSG2 853 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 AGTPBP1Q9UPW5 1226 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 THSD7AQ9UPZ6 1657 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 ADCY3O60266 1144 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 FOXD2O60548 495 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 VARSP26640 1264 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 STT3AP46977 705 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 GTF2BQ00403 316 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 SPP2Q13103 211 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 FAXCQ5TGI0 409 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 MROH9Q5TGP6 573 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 DRICH1Q6PGQ1 229 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 GRIN3AQ8TCU5 1115 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 DCAF4Q8WV16 495 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 C7orf26Q96N11 449 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 PPCSQ9HAB8 311 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 MRPL47Q9HD33 250 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 GGA1Q9UJY5 639 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 PCDHB4Q9Y5E5 795 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 MAD1L1Q9Y6D9 718 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 GNA15P30679 374 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 ITGA9Q13797 1035 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 CYP4A22Q5TCH4 519 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 TATDN1Q6P1N9 297 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 AMIGO2Q86SJ2 522 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 SLF2Q8IX21 1173 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 NKD2Q969F2 451 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 SMYD2Q9NRG4 433 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 PRR12Q9ULL5 1215 aa13.97□□□□□ -0.17
CCDC88C-201ENST00000331194 TNRC6CQ9HCJ0 1690 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 POLR2MP0CAP2 368 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 UGCGQ16739 394 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 ZNF394Q53GI3 561 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 BRDTQ58F21 947 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 MIER3Q7Z3K6 550 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 C12orf56Q8IXR9 622 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 RNF168Q8IYW5 571 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 TTC13Q8NBP0 860 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 BTBD7Q9P203 1132 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 DNAJC16Q9Y2G8 782 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 AFG3L2Q9Y4W6 797 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 PPME1Q9Y570 386 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 BRWD3Q6RI45 1802 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 NFASCO94856 1347 aa13.96□□□□□ -0.17
CCDC88C-201ENST00000331194 A0A0B4J269 797 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 PEX1O43933 1283 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 CRTAMO95727 393 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 HLA-DOAP06340 250 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 TFPTP0C1Z6 253 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 NCF2P19878 526 aaPredicted RBP13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 CYP24A1Q07973 514 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 PPIDQ08752 370 aaKnown RBP13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 TUBB3Q13509 450 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 TAF5Q15542 800 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 DCUN1D2Q6PH85 259 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 FRMD7Q6ZUT3 714 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 PHTF2Q8N3S3 785 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 SIKE1Q9BRV8 207 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 TEKT3Q9BXF9 490 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 WDR11Q9BZH6 1224 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 C1orf21Q9H246 121 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 KCND2Q9NZV8 630 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 TBX20Q9UMR3 447 aa13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 SCAF8Q9UPN6 1271 aaKnown RBP13.96□□□□□ -0.18
CCDC88C-201ENST00000331194 E7ESA3 106 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 KLF11O14901 512 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 CCNT2O60583 730 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 RFPL1O75677 317 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 MAP3K6O95382 1288 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ITGBL1O95965 494 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 SRGAP2CP0DJJ0 459 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 SRGAP2BP0DMP2 458 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF24P17028 368 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 COPAP53621 1224 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 CNGA3Q16281 694 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 SLC27A3Q5K4L6 730 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 NPNTQ6UXI9 565 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF554Q86TJ5 538 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ABRAQ8N0Z2 381 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TRIM11Q96F44 468 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 EPB41L1Q9H4G0 881 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 APOBEC3GQ9HC16 384 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 PNPOQ9NVS9 261 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 FETUBQ9UGM5 382 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 IP6K2Q9UHH9 426 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TELO2Q9Y4R8 837 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 E2F8A0AVK6 867 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TMEM191CA6NGB0 347 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 G3V3G9 751 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 DKC1O60832 514 aaKnown RBP eCLIP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 SIN3BO75182 1162 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TRMUO75648 421 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 TMEM191BP0C7N4 346 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 AOC1P19801 751 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 ITGAXP20702 1163 aa13.95□□□□□ -0.18
CCDC88C-201ENST00000331194 KCNA4P22459 653 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms