RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 USP13Q92995 863 aaPredicted RBP13.41□□□□□ -0.26
SS18-202ENST00000269138 PPP1R13BQ96KQ4 1090 aa13.41□□□□□ -0.26
SS18-202ENST00000269138 AGPAT1Q99943 283 aa13.41□□□□□ -0.26
SS18-202ENST00000269138 SMOC2Q9H3U7 446 aa13.41□□□□□ -0.26
SS18-202ENST00000269138 TRPV4Q9HBA0 871 aa13.41□□□□□ -0.26
SS18-202ENST00000269138 NAGPAQ9UK23 515 aa13.41□□□□□ -0.26
SS18-202ENST00000269138 CCL26Q9Y258 94 aa13.41□□□□□ -0.26
SS18-202ENST00000269138 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.41□□□□□ -0.262e-6■■□□□ 14.5
SS18-202ENST00000269138 TRAV19A0A0A6YYK7 116 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 PAPSS1O43252 624 aaPredicted RBP13.4□□□□□ -0.26
SS18-202ENST00000269138 COCHO43405 550 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 ERBB2P04626 1255 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 RARGP13631 454 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 CDH5P33151 784 aaPredicted RBP13.4□□□□□ -0.26
SS18-202ENST00000269138 AVPR1AP37288 418 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 NOMO3P69849 1222 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 ZBED6P86452 979 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 PTPN20Q4JDL3 420 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 HECTD3Q5T447 861 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 TMC6Q7Z403 805 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 ZNF677Q86XU0 584 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 SLC44A3Q8N4M1 653 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 TMEM35BQ8NCS4 154 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 RIN3Q8TB24 985 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 KHSRPQ92945 711 aaKnown RBP eCLIP13.4□□□□□ -0.263e-7■■■■□ 20.1
SS18-202ENST00000269138 SYT11Q9BT88 431 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 ZFP14Q9HCL3 533 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 CNGB3Q9NQW8 809 aa13.4□□□□□ -0.26
SS18-202ENST00000269138 LUC7L2Q9Y383 392 aaKnown RBP13.4□□□□□ -0.26
SS18-202ENST00000269138 ZNF638Q14966 1978 aaKnown RBP13.4□□□□□ -0.26
SS18-202ENST00000269138 SOBPA7XYQ1 873 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 HEPACAM2A8MVW5 462 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 MDM4O15151 490 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 TLR5O60602 858 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 ECI2O75521 394 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 OLFM2O95897 454 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 CYP1A1P04798 512 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 CKMP06732 381 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 WEE1P30291 646 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 ACADSBP45954 432 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 YWHAGP61981 247 aaKnown RBP eCLIP13.39□□□□□ -0.27
SS18-202ENST00000269138 ZXDBP98169 803 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 C2CD6Q53TS8 623 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 VITQ6UXI7 678 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 MTSS1LQ765P7 747 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 ZNF571Q7Z3V5 609 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 SCML4Q8N228 414 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 ZNF397Q8NF99 534 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 SLC30A5Q8TAD4 765 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 EDEM1Q92611 657 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 ELSPBP1Q96BH3 223 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 IQCDQ96DY2 449 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 PIWIL1Q96J94 861 aaKnown RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 COL25A1Q9BXS0 654 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 HAUS4Q9H6D7 363 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 TDP1Q9NUW8 608 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 SEPT11Q9NVA2 429 aaKnown RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.39□□□□□ -0.27
SS18-202ENST00000269138 SMPD4Q9NXE4 827 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 IGSF9Q9P2J2 1179 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 MUTYHQ9UIF7 546 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 ZMYM5Q9UJ78 669 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 CEP83Q9Y592 693 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 OBSL1O75147 1896 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 NARSO43776 548 aaKnown RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 FBXO21O94952 628 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 LSM8O95777 96 aaKnown RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 CCDC172P0C7W6 258 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 MBL2P11226 248 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 PRKCIP41743 596 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 SLC7A9P82251 487 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 KLHL30Q0D2K2 578 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 TBX2Q13207 712 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 GRM2Q14416 872 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 TAF5Q15542 800 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 CLEC16AQ2KHT3 1053 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 BSPRYQ5W0U4 402 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 HGSNATQ68CP4 663 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 TTC16Q8NEE8 873 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 IRGQQ8WZA9 623 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 SYN2Q92777 582 aaPredicted RBP13.39□□□□□ -0.27
SS18-202ENST00000269138 NOX5Q96PH1 765 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 CYLDQ9NQC7 956 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 GKN1Q9NS71 199 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 CLIC5Q9NZA1 410 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 CPQQ9Y646 472 aa13.39□□□□□ -0.27
SS18-202ENST00000269138 DENND4CQ5VZ89 1909 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 ANAPC1Q9H1A4 1944 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 TTC28Q96AY4 2481 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 DPYSL4O14531 572 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 PLEKP08567 350 aaPredicted RBP13.38□□□□□ -0.27
SS18-202ENST00000269138 RALAP11233 206 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 UNGP13051 313 aaPredicted RBP13.38□□□□□ -0.27
SS18-202ENST00000269138 PFKLP17858 780 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 TNFAIP3P21580 790 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 PSEN1P49768 467 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 TUBP50607 506 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 ADKP55263 362 aaKnown RBP13.38□□□□□ -0.27
SS18-202ENST00000269138 TDGQ13569 410 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 C10orf120Q5SQS8 335 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms