RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CCDC142Q17RM4 750 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 NBPF20Q3BBV1 942 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 ANKRD20A8PQ5CZ79 823 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 ZC3H12AQ5D1E8 599 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 NPNTQ6UXI9 565 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 CPLX4Q7Z7G2 160 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 ZC3H18Q86VM9 953 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 B3GALNT2Q8NCR0 500 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 PPP1R10Q96QC0 940 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 SNRNP25Q9BV90 132 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 VPS37BQ9H9H4 285 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 PCDH18Q9HCL0 1135 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 GPATCH2LQ9NWQ4 482 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 GGA2Q9UJY4 613 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 NAALADL1Q9UQQ1 740 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 ATXN2Q99700 1313 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 ZNF487B1APH4 448 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 GOLGA8MH3BSY2 632 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 MYO1CO00159 1063 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CYB561D2O14569 222 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 XPO1O14980 1071 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CTGFP29279 349 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 FCGRTP55899 365 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 HDAC4P56524 1084 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 EFHC1Q5JVL4 640 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 C1orf228Q6PIY5 440 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CXCL17Q6UXB2 119 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 PLD5Q8N7P1 536 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 NAT8LQ8N9F0 302 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CLEC4CQ8WTT0 213 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 HNRNPABQ99729 332 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 ZNF670Q9BS34 389 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 PPCSQ9HAB8 311 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 TBK1Q9UHD2 729 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 ST3GAL5Q9UNP4 418 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CFAP69A5D8W1 941 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 C5orf60A6NFR6 353 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 KIAA0754O94854 1291 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 IL4RP24394 825 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 BCAR1P56945 870 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CORO7P57737 925 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 BASP1P80723 227 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 NR1H3Q13133 447 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 FASTKD3Q14CZ7 662 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 HP1BP3Q5SSJ5 553 aaPredicted RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 SLC9A4Q6AI14 798 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 GDF6Q6KF10 455 aaPredicted RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 OSTM1Q86WC4 334 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CCDC13Q8IYE1 715 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CENPIQ92674 756 aaPredicted RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 ZFP42Q96MM3 310 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 PRMT1Q99873 361 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 DUSP16Q9BY84 665 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 UPF3AQ9H1J1 476 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CCDC134Q9H6E4 229 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 KCNK9Q9NPC2 374 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 CHST12Q9NRB3 414 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 FAM105AQ9NUU6 356 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 ACTL7BQ9Y614 415 aa13.48□□□□□ -0.25
SPTLC1-201ENST00000262554 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 TMEM120BA0PK00 339 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 FAM155AB1AL88 458 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 CA12O43570 354 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 PGK1P00558 417 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 RPLP2P05387 115 aaKnown RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 BRAFP15056 766 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 DRD4P21917 467 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 PHBP35232 272 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 PPP6R3Q5H9R7 873 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 GKAP1Q5VSY0 366 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 ANKRD22Q5VYY1 191 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 TADA2BQ86TJ2 420 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 TDRPQ86YL5 185 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 CYP4X1Q8N118 509 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 PQLC3Q8N755 202 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 PYROXD1Q8WU10 500 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 DYDC1Q8WWB3 177 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 FAF2Q96CS3 445 aa13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 ZNF317Q96PQ6 595 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 C11orf84Q9BUA3 381 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 XPO7Q9UIA9 1087 aaKnown RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-201ENST00000262554 THP07101 528 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 RARBP10826 455 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 ZFXP17010 805 aaPredicted RBP13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 PTPN1P18031 435 aaKnown RBP13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 TFE3P19532 575 aaPredicted RBP13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 TKTP29401 623 aaKnown RBP13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 TMED2Q15363 201 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 DPYSL2Q16555 572 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 QPCTQ16769 361 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 CA9Q16790 459 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 WSCD1Q658N2 575 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 VSTM1Q6UX27 236 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 STRADAQ7RTN6 431 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 SERINC5Q86VE9 423 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 ANKMY2Q8IV38 441 aa13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 SRRM1Q8IYB3 904 aaKnown RBP13.46□□□□□ -0.25
SPTLC1-201ENST00000262554 CACNA2D3Q8IZS8 1091 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms