RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 ABCC11Q96J66 1382 aa26.04■■□□□ 1.76
PNKP-230ENST00000638016 CDC42BPGQ6DT37 1551 aa26.03■■□□□ 1.76
PNKP-230ENST00000638016 LAMC1P11047 1609 aa26.03■■□□□ 1.76
PNKP-230ENST00000638016 KDM2AQ9Y2K7 1162 aa26.02■■□□□ 1.76
PNKP-230ENST00000638016 DHX57Q6P158 1386 aaKnown RBP25.99■■□□□ 1.75
PNKP-230ENST00000638016 DCAF11Q8TEB1 546 aa25.99■■□□□ 1.75
PNKP-230ENST00000638016 NUTM2FA1L443 756 aa25.98■■□□□ 1.75
PNKP-230ENST00000638016 POTEAQ6S8J7 498 aa25.97■■□□□ 1.75
PNKP-230ENST00000638016 ADGRB1O14514 1584 aa25.97■■□□□ 1.75
PNKP-230ENST00000638016 SPATA31A6Q5VVP1 1343 aa25.95■■□□□ 1.75
PNKP-230ENST00000638016 NUTM2BA6NNL0 878 aaPredicted RBP25.94■■□□□ 1.74
PNKP-230ENST00000638016 NUTM2EB1AL46 878 aaPredicted RBP25.94■■□□□ 1.74
PNKP-230ENST00000638016 SAFB2Q14151 953 aaKnown RBP eCLIP25.94■■□□□ 1.74
PNKP-230ENST00000638016 NUTM2AQ8IVF1 878 aaPredicted RBP25.94■■□□□ 1.74
PNKP-230ENST00000638016 FMN2Q9NZ56 1722 aa25.94■■□□□ 1.74
PNKP-230ENST00000638016 PNPLA6Q8IY17 1366 aa25.92■■□□□ 1.74
PNKP-230ENST00000638016 ESCO1Q5FWF5 840 aa25.91■■□□□ 1.74
PNKP-230ENST00000638016 PRAM1Q96QH2 718 aa25.91■■□□□ 1.74
PNKP-230ENST00000638016 MEX3CQ5U5Q3 659 aaKnown RBP25.9■■□□□ 1.74
PNKP-230ENST00000638016 LRRC59Q96AG4 307 aaKnown RBP25.9■■□□□ 1.74
PNKP-230ENST00000638016 SOS2Q07890 1332 aaPredicted RBP25.88■■□□□ 1.73
PNKP-230ENST00000638016 RGPD8O14715 1765 aaPredicted RBP25.88■■□□□ 1.73
PNKP-230ENST00000638016 XPCQ01831 940 aaPredicted RBP25.88■■□□□ 1.73
PNKP-230ENST00000638016 TRAK1Q9UPV9 953 aa25.88■■□□□ 1.73
PNKP-230ENST00000638016 DLC1Q96QB1 1528 aa25.88■■□□□ 1.73
PNKP-230ENST00000638016 SIRT1Q96EB6 747 aa25.87■■□□□ 1.73
PNKP-230ENST00000638016 PXDNQ92626 1479 aa25.85■■□□□ 1.73
PNKP-230ENST00000638016 FOXO3O43524 673 aa25.84■■□□□ 1.73
PNKP-230ENST00000638016 POGKQ9P215 609 aa25.82■■□□□ 1.72
PNKP-230ENST00000638016 HIRIP3Q9BW71 556 aaPredicted RBP25.8■■□□□ 1.72
PNKP-230ENST00000638016 NPHP3Q7Z494 1330 aa25.8■■□□□ 1.72
PNKP-230ENST00000638016 USP32Q8NFA0 1604 aa25.8■■□□□ 1.72
PNKP-230ENST00000638016 ARHGEF28Q8N1W1 1705 aaKnown RBP25.8■■□□□ 1.72
PNKP-230ENST00000638016 MINK1Q8N4C8 1332 aaPredicted RBP25.79■■□□□ 1.72
PNKP-230ENST00000638016 ADGRB2O60241 1585 aa25.78■■□□□ 1.72
PNKP-230ENST00000638016 KIF1AQ12756 1690 aa25.78■■□□□ 1.72
PNKP-230ENST00000638016 SIN3AQ96ST3 1273 aa25.78■■□□□ 1.72
PNKP-230ENST00000638016 ADAMTS2O95450 1211 aa25.77■■□□□ 1.72
PNKP-230ENST00000638016 STAC3Q96MF2 364 aa25.77■■□□□ 1.72
PNKP-230ENST00000638016 C8orf37Q96NL8 207 aa25.76■■□□□ 1.71
PNKP-230ENST00000638016 AFF2P51816 1311 aa25.76■■□□□ 1.71
PNKP-230ENST00000638016 COL22A1Q8NFW1 1626 aaPredicted RBP25.76■■□□□ 1.71
PNKP-230ENST00000638016 NBPF1Q3BBV0 1214 aa25.73■■□□□ 1.71
PNKP-230ENST00000638016 KIAA1210Q9ULL0 1709 aa25.73■■□□□ 1.71
PNKP-230ENST00000638016 ZNF772Q68DY9 489 aaPredicted RBP25.72■■□□□ 1.71
PNKP-230ENST00000638016 PHF8Q9UPP1 1060 aa25.72■■□□□ 1.71
PNKP-230ENST00000638016 PRR36Q9H6K5 1346 aa25.71■■□□□ 1.71
PNKP-230ENST00000638016 NEUROD1Q13562 356 aa25.69■■□□□ 1.7
PNKP-230ENST00000638016 PMFBP1Q8TBY8 1022 aa25.69■■□□□ 1.7
PNKP-230ENST00000638016 L3MBTL2Q969R5 705 aa25.69■■□□□ 1.7
PNKP-230ENST00000638016 KRT28Q7Z3Y7 464 aa25.68■■□□□ 1.7
PNKP-230ENST00000638016 ANKARQ7Z5J8 1434 aa25.68■■□□□ 1.7
PNKP-230ENST00000638016 TULP4Q9NRJ4 1543 aa25.67■■□□□ 1.7
PNKP-230ENST00000638016 SPATA31A3Q5VYP0 1347 aa25.66■■□□□ 1.7
PNKP-230ENST00000638016 WASLO00401 505 aaPredicted RBP25.65■■□□□ 1.7
PNKP-230ENST00000638016 NGLY1Q96IV0 654 aa25.65■■□□□ 1.7
PNKP-230ENST00000638016 PLEKHG5O94827 1062 aa25.64■■□□□ 1.7
PNKP-230ENST00000638016 MARF1Q9Y4F3 1742 aaKnown RBP25.63■■□□□ 1.69
PNKP-230ENST00000638016 TNS3Q68CZ2 1445 aa25.63■■□□□ 1.69
PNKP-230ENST00000638016 ATP7BP35670 1465 aa25.6■■□□□ 1.69
PNKP-230ENST00000638016 RXRBP28702 533 aa25.6■■□□□ 1.69
PNKP-230ENST00000638016 TRPM3Q9HCF6 1732 aaPredicted RBP25.6■■□□□ 1.69
PNKP-230ENST00000638016 CABLES1Q8TDN4 633 aa25.59■■□□□ 1.69
PNKP-230ENST00000638016 QTRT2Q9H974 415 aaKnown RBP25.59■■□□□ 1.69
PNKP-230ENST00000638016 TRPM1Q7Z4N2 1603 aa25.59■■□□□ 1.69
PNKP-230ENST00000638016 PSME1Q06323 249 aa25.58■■□□□ 1.69
PNKP-230ENST00000638016 TRIM26Q12899 539 aaPredicted RBP25.58■■□□□ 1.69
PNKP-230ENST00000638016 EIF3AQ14152 1382 aaKnown RBP25.57■■□□□ 1.68
PNKP-230ENST00000638016 ABCA3Q99758 1704 aa25.57■■□□□ 1.68
PNKP-230ENST00000638016 USP21Q9UK80 565 aa25.57■■□□□ 1.68
PNKP-230ENST00000638016 SBNO1A3KN83 1393 aa25.56■■□□□ 1.68
PNKP-230ENST00000638016 LMOD2Q6P5Q4 547 aa25.56■■□□□ 1.68
PNKP-230ENST00000638016 RGS12O14924 1447 aa25.55■■□□□ 1.68
PNKP-230ENST00000638016 FNBP4Q8N3X1 1017 aaPredicted RBP25.55■■□□□ 1.68
PNKP-230ENST00000638016 CDK19Q9BWU1 502 aa25.55■■□□□ 1.68
PNKP-230ENST00000638016 ITSN1Q15811 1721 aa25.54■■□□□ 1.68
PNKP-230ENST00000638016 NUDT16Q96DE0 195 aaKnown RBP25.54■■□□□ 1.68
PNKP-230ENST00000638016 TOPAZ1Q8N9V7 1692 aa25.54■■□□□ 1.68
PNKP-230ENST00000638016 QRICH2Q9H0J4 1663 aa25.54■■□□□ 1.68
PNKP-230ENST00000638016 ALS2Q96Q42 1657 aa25.53■■□□□ 1.68
PNKP-230ENST00000638016 BCL9LQ86UU0 1499 aa25.53■■□□□ 1.68
PNKP-230ENST00000638016 CDK12Q9NYV4 1490 aaPredicted RBP25.52■■□□□ 1.68
PNKP-230ENST00000638016 RBM6P78332 1123 aaKnown RBP25.51■■□□□ 1.67
PNKP-230ENST00000638016 NBPF8Q3BBV2 869 aa25.51■■□□□ 1.67
PNKP-230ENST00000638016 CENPJQ9HC77 1338 aaPredicted RBP25.51■■□□□ 1.67
PNKP-230ENST00000638016 ATRNO75882 1429 aa25.5■■□□□ 1.67
PNKP-230ENST00000638016 NGDNQ8NEJ9 315 aaKnown RBP25.5■■□□□ 1.67
PNKP-230ENST00000638016 ARHGEF10O15013 1369 aa25.49■■□□□ 1.67
PNKP-230ENST00000638016 GPRASP1Q5JY77 1395 aa25.49■■□□□ 1.67
PNKP-230ENST00000638016 TRPC5Q9UL62 973 aaPredicted RBP25.48■■□□□ 1.67
PNKP-230ENST00000638016 ROCK2O75116 1388 aaKnown RBP25.47■■□□□ 1.67
PNKP-230ENST00000638016 HAP1P54257 671 aaPredicted RBP25.47■■□□□ 1.67
PNKP-230ENST00000638016 SLIT2O94813 1529 aa25.47■■□□□ 1.67
PNKP-230ENST00000638016 CABP2Q9NPB3 220 aa25.46■■□□□ 1.67
PNKP-230ENST00000638016 PLCH1Q4KWH8 1693 aa25.45■■□□□ 1.67
PNKP-230ENST00000638016 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.45■■□□□ 1.66
PNKP-230ENST00000638016 CRYBG1Q9Y4K1 1723 aa25.45■■□□□ 1.66
PNKP-230ENST00000638016 PAK3O75914 559 aaPredicted RBP25.44■■□□□ 1.66
PNKP-230ENST00000638016 SRPK2P78362 688 aaKnown RBP25.43■■□□□ 1.66
PNKP-230ENST00000638016 ACEP12821 1306 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms