RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 DHX57Q6P158 1386 aaKnown RBP11.66□□□□□ -0.54
PNKP-229ENST00000637897 PNPLA6Q8IY17 1366 aa11.66□□□□□ -0.54
PNKP-229ENST00000637897 SOS2Q07890 1332 aaPredicted RBP11.65□□□□□ -0.54
PNKP-229ENST00000637897 SPATA31A6Q5VVP1 1343 aa11.65□□□□□ -0.54
PNKP-229ENST00000637897 YTHDC2Q9H6S0 1430 aaKnown RBP11.65□□□□□ -0.54
PNKP-229ENST00000637897 ADGRB1O14514 1584 aa11.65□□□□□ -0.54
PNKP-229ENST00000637897 CDC42BPGQ6DT37 1551 aa11.65□□□□□ -0.54
PNKP-229ENST00000637897 HRCP23327 699 aa11.64□□□□□ -0.55
PNKP-229ENST00000637897 PXDNQ92626 1479 aa11.63□□□□□ -0.55
PNKP-229ENST00000637897 NUTM2FA1L443 756 aa11.61□□□□□ -0.55
PNKP-229ENST00000637897 SIRT1Q96EB6 747 aa11.61□□□□□ -0.55
PNKP-229ENST00000637897 FMN2Q9NZ56 1722 aa11.6□□□□□ -0.55
PNKP-229ENST00000637897 NUTM2BA6NNL0 878 aaPredicted RBP11.6□□□□□ -0.55
PNKP-229ENST00000637897 NUTM2EB1AL46 878 aaPredicted RBP11.6□□□□□ -0.55
PNKP-229ENST00000637897 NUTM2AQ8IVF1 878 aaPredicted RBP11.6□□□□□ -0.55
PNKP-229ENST00000637897 LRRC59Q96AG4 307 aaKnown RBP11.6□□□□□ -0.55
PNKP-229ENST00000637897 ACIN1Q9UKV3 1341 aaKnown RBP11.6□□□□□ -0.55
PNKP-229ENST00000637897 RGPD8O14715 1765 aaPredicted RBP11.59□□□□□ -0.55
PNKP-229ENST00000637897 USP32Q8NFA0 1604 aa11.58□□□□□ -0.56
PNKP-229ENST00000637897 FOXO3O43524 673 aa11.58□□□□□ -0.56
PNKP-229ENST00000637897 XPCQ01831 940 aaPredicted RBP11.58□□□□□ -0.56
PNKP-229ENST00000637897 COL22A1Q8NFW1 1626 aaPredicted RBP11.57□□□□□ -0.56
PNKP-229ENST00000637897 DLC1Q96QB1 1528 aa11.57□□□□□ -0.56
PNKP-229ENST00000637897 ESCO1Q5FWF5 840 aa11.57□□□□□ -0.56
PNKP-229ENST00000637897 PRAM1Q96QH2 718 aa11.57□□□□□ -0.56
PNKP-229ENST00000637897 KDM2AQ9Y2K7 1162 aa11.57□□□□□ -0.56
PNKP-229ENST00000637897 AFF2P51816 1311 aa11.57□□□□□ -0.56
PNKP-229ENST00000637897 DCAF11Q8TEB1 546 aa11.56□□□□□ -0.56
PNKP-229ENST00000637897 SAFB2Q14151 953 aaKnown RBP eCLIP11.55□□□□□ -0.56
PNKP-229ENST00000637897 PRR36Q9H6K5 1346 aa11.55□□□□□ -0.56
PNKP-229ENST00000637897 ADAMTS2O95450 1211 aa11.54□□□□□ -0.56
PNKP-229ENST00000637897 MEX3CQ5U5Q3 659 aaKnown RBP11.54□□□□□ -0.56
PNKP-229ENST00000637897 ZNF772Q68DY9 489 aaPredicted RBP11.54□□□□□ -0.56
PNKP-229ENST00000637897 C8orf37Q96NL8 207 aa11.54□□□□□ -0.56
PNKP-229ENST00000637897 TRAK1Q9UPV9 953 aa11.54□□□□□ -0.56
PNKP-229ENST00000637897 ADGRB2O60241 1585 aa11.54□□□□□ -0.56
PNKP-229ENST00000637897 NPHP3Q7Z494 1330 aa11.53□□□□□ -0.56
PNKP-229ENST00000637897 NBPF1Q3BBV0 1214 aa11.52□□□□□ -0.57
PNKP-229ENST00000637897 FNBP4Q8N3X1 1017 aaPredicted RBP11.52□□□□□ -0.57
PNKP-229ENST00000637897 HIRIP3Q9BW71 556 aaPredicted RBP11.52□□□□□ -0.57
PNKP-229ENST00000637897 SPATA31A3Q5VYP0 1347 aa11.52□□□□□ -0.57
PNKP-229ENST00000637897 RGS12O14924 1447 aa11.52□□□□□ -0.57
PNKP-229ENST00000637897 BCL9LQ86UU0 1499 aa11.51□□□□□ -0.57
PNKP-229ENST00000637897 ARHGEF28Q8N1W1 1705 aaKnown RBP11.51□□□□□ -0.57
PNKP-229ENST00000637897 KIF1AQ12756 1690 aa11.5□□□□□ -0.57
PNKP-229ENST00000637897 RXRBP28702 533 aa11.5□□□□□ -0.57
PNKP-229ENST00000637897 QTRT2Q9H974 415 aaKnown RBP11.5□□□□□ -0.57
PNKP-229ENST00000637897 PHF8Q9UPP1 1060 aa11.5□□□□□ -0.57
PNKP-229ENST00000637897 CDK12Q9NYV4 1490 aaPredicted RBP11.5□□□□□ -0.57
PNKP-229ENST00000637897 SRCAPQ6ZRS2 3230 aa11.49□□□□□ -0.57
PNKP-229ENST00000637897 TRIM26Q12899 539 aaPredicted RBP11.49□□□□□ -0.57
PNKP-229ENST00000637897 KRT28Q7Z3Y7 464 aa11.49□□□□□ -0.57
PNKP-229ENST00000637897 UPF1Q92900 1129 aaKnown RBP eCLIP11.49□□□□□ -0.57
PNKP-229ENST00000637897 SIN3AQ96ST3 1273 aa11.49□□□□□ -0.57
PNKP-229ENST00000637897 MINK1Q8N4C8 1332 aaPredicted RBP11.49□□□□□ -0.57
PNKP-229ENST00000637897 ATRNO75882 1429 aa11.49□□□□□ -0.57
PNKP-229ENST00000637897 TRPM3Q9HCF6 1732 aaPredicted RBP11.49□□□□□ -0.57
PNKP-229ENST00000637897 MARF1Q9Y4F3 1742 aaKnown RBP11.49□□□□□ -0.57
PNKP-229ENST00000637897 PMFBP1Q8TBY8 1022 aa11.48□□□□□ -0.57
PNKP-229ENST00000637897 CABLES1Q8TDN4 633 aa11.48□□□□□ -0.57
PNKP-229ENST00000637897 NGLY1Q96IV0 654 aa11.48□□□□□ -0.57
PNKP-229ENST00000637897 ANKARQ7Z5J8 1434 aa11.48□□□□□ -0.57
PNKP-229ENST00000637897 SLIT2O94813 1529 aa11.47□□□□□ -0.57
PNKP-229ENST00000637897 TNS3Q68CZ2 1445 aa11.47□□□□□ -0.57
PNKP-229ENST00000637897 WASLO00401 505 aaPredicted RBP11.47□□□□□ -0.57
PNKP-229ENST00000637897 STAC3Q96MF2 364 aa11.47□□□□□ -0.57
PNKP-229ENST00000637897 POGKQ9P215 609 aa11.47□□□□□ -0.57
PNKP-229ENST00000637897 ABCA3Q99758 1704 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 TULP4Q9NRJ4 1543 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 ATP7BP35670 1465 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 SBNO1A3KN83 1393 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 RBM6P78332 1123 aaKnown RBP11.46□□□□□ -0.57
PNKP-229ENST00000637897 L3MBTL2Q969R5 705 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 PCGF6Q9BYE7 350 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 USP21Q9UK80 565 aa11.46□□□□□ -0.57
PNKP-229ENST00000637897 KIAA1210Q9ULL0 1709 aa11.46□□□□□ -0.58
PNKP-229ENST00000637897 ALS2Q96Q42 1657 aa11.46□□□□□ -0.58
PNKP-229ENST00000637897 CRYBG1Q9Y4K1 1723 aa11.44□□□□□ -0.58
PNKP-229ENST00000637897 GLI3P10071 1580 aa11.44□□□□□ -0.58
PNKP-229ENST00000637897 NBPF8Q3BBV2 869 aa11.42□□□□□ -0.58
PNKP-229ENST00000637897 NUDT16Q96DE0 195 aaKnown RBP11.42□□□□□ -0.58
PNKP-229ENST00000637897 CDK19Q9BWU1 502 aa11.42□□□□□ -0.58
PNKP-229ENST00000637897 TRPC5Q9UL62 973 aaPredicted RBP11.42□□□□□ -0.58
PNKP-229ENST00000637897 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.42□□□□□ -0.58
PNKP-229ENST00000637897 TOPAZ1Q8N9V7 1692 aa11.42□□□□□ -0.58
PNKP-229ENST00000637897 EP400Q96L91 3159 aa11.41□□□□□ -0.58
PNKP-229ENST00000637897 FAM83GA6ND36 823 aa11.41□□□□□ -0.58
PNKP-229ENST00000637897 PSME1Q06323 249 aa11.41□□□□□ -0.58
PNKP-229ENST00000637897 RALGAPBQ86X10 1494 aa11.4□□□□□ -0.58
PNKP-229ENST00000637897 PLEKHG5O94827 1062 aa11.4□□□□□ -0.58
PNKP-229ENST00000637897 UNC5CLQ8IV45 518 aa11.4□□□□□ -0.58
PNKP-229ENST00000637897 GJD4Q96KN9 370 aaPredicted RBP11.4□□□□□ -0.58
PNKP-229ENST00000637897 POLR3AO14802 1390 aaPredicted RBP11.4□□□□□ -0.59
PNKP-229ENST00000637897 PLCH1Q4KWH8 1693 aa11.4□□□□□ -0.59
PNKP-229ENST00000637897 TRPM1Q7Z4N2 1603 aa11.39□□□□□ -0.59
PNKP-229ENST00000637897 NRAPQ86VF7 1730 aa11.39□□□□□ -0.59
PNKP-229ENST00000637897 ARHGEF10O15013 1369 aa11.38□□□□□ -0.59
PNKP-229ENST00000637897 PLEKHG3A1L390 1219 aa11.37□□□□□ -0.59
PNKP-229ENST00000637897 NEUROD1Q13562 356 aa11.37□□□□□ -0.59
PNKP-229ENST00000637897 BRWD3Q6RI45 1802 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms