RNA–Protein interactions for RNA: ENST00000612050.4

CBWD3-208, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,440 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-208ENST00000612050 WAPLQ7Z5K2 1190 aa17.79■□□□□ 0.44
CBWD3-208ENST00000612050 COL16A1Q07092 1604 aaPredicted RBP17.78■□□□□ 0.44
CBWD3-208ENST00000612050 C1orf167Q5SNV9 1468 aa17.78■□□□□ 0.44
CBWD3-208ENST00000612050 LRRC59Q96AG4 307 aaKnown RBP17.77■□□□□ 0.44
CBWD3-208ENST00000612050 DLC1Q96QB1 1528 aa17.77■□□□□ 0.43
CBWD3-208ENST00000612050 SPATA31A6Q5VVP1 1343 aa17.76■□□□□ 0.43
CBWD3-208ENST00000612050 NHSL1Q5SYE7 1610 aa17.76■□□□□ 0.43
CBWD3-208ENST00000612050 ESCO1Q5FWF5 840 aa17.75■□□□□ 0.43
CBWD3-208ENST00000612050 PRAM1Q96QH2 718 aa17.75■□□□□ 0.43
CBWD3-208ENST00000612050 TRAK1Q9UPV9 953 aa17.75■□□□□ 0.43
CBWD3-208ENST00000612050 NEUROD1Q13562 356 aa17.74■□□□□ 0.43
CBWD3-208ENST00000612050 MEX3CQ5U5Q3 659 aaKnown RBP17.74■□□□□ 0.43
CBWD3-208ENST00000612050 KIAA1210Q9ULL0 1709 aa17.74■□□□□ 0.43
CBWD3-208ENST00000612050 SHPRHQ149N8 1683 aa17.74■□□□□ 0.43
CBWD3-208ENST00000612050 SAFB2Q14151 953 aaKnown RBP eCLIP17.73■□□□□ 0.43
CBWD3-208ENST00000612050 EIF3AQ14152 1382 aaKnown RBP17.73■□□□□ 0.43
CBWD3-208ENST00000612050 NPHP3Q7Z494 1330 aa17.73■□□□□ 0.43
CBWD3-208ENST00000612050 ADGRB1O14514 1584 aa17.72■□□□□ 0.43
CBWD3-208ENST00000612050 PLEKHH1Q9ULM0 1364 aa17.72■□□□□ 0.43
CBWD3-208ENST00000612050 FMN2Q9NZ56 1722 aa17.71■□□□□ 0.43
CBWD3-208ENST00000612050 NUTM2FA1L443 756 aa17.71■□□□□ 0.43
CBWD3-208ENST00000612050 ORAI2Q96SN7 254 aa17.71■□□□□ 0.43
CBWD3-208ENST00000612050 KIF1AQ12756 1690 aa17.69■□□□□ 0.42
CBWD3-208ENST00000612050 SIN3AQ96ST3 1273 aa17.68■□□□□ 0.42
CBWD3-208ENST00000612050 NUTM2BA6NNL0 878 aaPredicted RBP17.66■□□□□ 0.42
CBWD3-208ENST00000612050 NUTM2EB1AL46 878 aaPredicted RBP17.66■□□□□ 0.42
CBWD3-208ENST00000612050 NUTM2AQ8IVF1 878 aaPredicted RBP17.66■□□□□ 0.42
CBWD3-208ENST00000612050 L3MBTL2Q969R5 705 aa17.66■□□□□ 0.42
CBWD3-208ENST00000612050 ADGRB2O60241 1585 aa17.66■□□□□ 0.42
CBWD3-208ENST00000612050 MINK1Q8N4C8 1332 aaPredicted RBP17.66■□□□□ 0.42
CBWD3-208ENST00000612050 ARHGEF28Q8N1W1 1705 aaKnown RBP17.66■□□□□ 0.42
CBWD3-208ENST00000612050 TONSLQ96HA7 1378 aa17.66■□□□□ 0.42
CBWD3-208ENST00000612050 DDX17Q92841 729 aaKnown RBP17.65■□□□□ 0.42
CBWD3-208ENST00000612050 SOS2Q07890 1332 aaPredicted RBP17.65■□□□□ 0.42
CBWD3-208ENST00000612050 FOXO3O43524 673 aa17.64■□□□□ 0.42
CBWD3-208ENST00000612050 ILDR2Q71H61 639 aa17.64■□□□□ 0.42
CBWD3-208ENST00000612050 ANKARQ7Z5J8 1434 aa17.64■□□□□ 0.42
CBWD3-208ENST00000612050 PSME1Q06323 249 aa17.64■□□□□ 0.41
CBWD3-208ENST00000612050 HIRIP3Q9BW71 556 aaPredicted RBP17.64■□□□□ 0.41
CBWD3-208ENST00000612050 PHF8Q9UPP1 1060 aa17.64■□□□□ 0.41
CBWD3-208ENST00000612050 PNPLA6Q8IY17 1366 aa17.62■□□□□ 0.41
CBWD3-208ENST00000612050 ZNF772Q68DY9 489 aaPredicted RBP17.62■□□□□ 0.41
CBWD3-208ENST00000612050 RGPD8O14715 1765 aaPredicted RBP17.61■□□□□ 0.41
CBWD3-208ENST00000612050 WASLO00401 505 aaPredicted RBP17.61■□□□□ 0.41
CBWD3-208ENST00000612050 ROCK2O75116 1388 aaKnown RBP17.6■□□□□ 0.41
CBWD3-208ENST00000612050 TULP4Q9NRJ4 1543 aa17.59■□□□□ 0.41
CBWD3-208ENST00000612050 ITSN1Q15811 1721 aa17.59■□□□□ 0.41
CBWD3-208ENST00000612050 SOCS7O14512 581 aa17.59■□□□□ 0.41
CBWD3-208ENST00000612050 NBPF1Q3BBV0 1214 aa17.59■□□□□ 0.41
CBWD3-208ENST00000612050 XPCQ01831 940 aaPredicted RBP17.58■□□□□ 0.41
CBWD3-208ENST00000612050 KRT28Q7Z3Y7 464 aa17.58■□□□□ 0.41
CBWD3-208ENST00000612050 CENPJQ9HC77 1338 aaPredicted RBP17.58■□□□□ 0.4
CBWD3-208ENST00000612050 GPRASP1Q5JY77 1395 aa17.58■□□□□ 0.4
CBWD3-208ENST00000612050 LRP6O75581 1613 aa17.58■□□□□ 0.4
CBWD3-208ENST00000612050 TRPM1Q7Z4N2 1603 aa17.58■□□□□ 0.4
CBWD3-208ENST00000612050 MSH5O43196 834 aa17.57■□□□□ 0.4
CBWD3-208ENST00000612050 HAP1P54257 671 aaPredicted RBP17.57■□□□□ 0.4
CBWD3-208ENST00000612050 PXDNQ92626 1479 aa17.57■□□□□ 0.4
CBWD3-208ENST00000612050 NGDNQ8NEJ9 315 aaKnown RBP17.55■□□□□ 0.4
CBWD3-208ENST00000612050 PMFBP1Q8TBY8 1022 aa17.55■□□□□ 0.4
CBWD3-208ENST00000612050 C8orf37Q96NL8 207 aa17.55■□□□□ 0.4
CBWD3-208ENST00000612050 COL22A1Q8NFW1 1626 aaPredicted RBP17.55■□□□□ 0.4
CBWD3-208ENST00000612050 ADAMTS2O95450 1211 aa17.55■□□□□ 0.4
CBWD3-208ENST00000612050 LMOD2Q6P5Q4 547 aa17.55■□□□□ 0.4
CBWD3-208ENST00000612050 NGLY1Q96IV0 654 aa17.55■□□□□ 0.4
CBWD3-208ENST00000612050 QRICH2Q9H0J4 1663 aa17.54■□□□□ 0.4
CBWD3-208ENST00000612050 SRPK2P78362 688 aaKnown RBP17.54■□□□□ 0.4
CBWD3-208ENST00000612050 CDK19Q9BWU1 502 aa17.54■□□□□ 0.4
CBWD3-208ENST00000612050 PCGF6Q9BYE7 350 aa17.54■□□□□ 0.4
CBWD3-208ENST00000612050 USP32Q8NFA0 1604 aa17.54■□□□□ 0.4
CBWD3-208ENST00000612050 ARHGEF10O15013 1369 aa17.53■□□□□ 0.4
CBWD3-208ENST00000612050 SPATA31A3Q5VYP0 1347 aa17.53■□□□□ 0.4
CBWD3-208ENST00000612050 RGS17Q9UGC6 210 aaPredicted RBP17.53■□□□□ 0.4
CBWD3-208ENST00000612050 TNS3Q68CZ2 1445 aa17.52■□□□□ 0.4
CBWD3-208ENST00000612050 SBNO1A3KN83 1393 aa17.52■□□□□ 0.4
CBWD3-208ENST00000612050 AFF2P51816 1311 aa17.52■□□□□ 0.4
CBWD3-208ENST00000612050 NUDT16Q96DE0 195 aaKnown RBP17.52■□□□□ 0.4
CBWD3-208ENST00000612050 EVC2Q86UK5 1308 aa17.5■□□□□ 0.39
CBWD3-208ENST00000612050 POTEAQ6S8J7 498 aa17.5■□□□□ 0.39
CBWD3-208ENST00000612050 CARD11Q9BXL7 1154 aa17.5■□□□□ 0.39
CBWD3-208ENST00000612050 CCDC61Q9Y6R9 512 aa17.5■□□□□ 0.39
CBWD3-208ENST00000612050 CLSPNQ9HAW4 1339 aa17.5■□□□□ 0.39
CBWD3-208ENST00000612050 ATP7BP35670 1465 aa17.49■□□□□ 0.39
CBWD3-208ENST00000612050 PRR36Q9H6K5 1346 aa17.49■□□□□ 0.39
CBWD3-208ENST00000612050 PAK3O75914 559 aaPredicted RBP17.48■□□□□ 0.39
CBWD3-208ENST00000612050 MARF1Q9Y4F3 1742 aaKnown RBP17.48■□□□□ 0.39
CBWD3-208ENST00000612050 RXRBP28702 533 aa17.47■□□□□ 0.39
CBWD3-208ENST00000612050 USP21Q9UK80 565 aa17.47■□□□□ 0.39
CBWD3-208ENST00000612050 RALGAPBQ86X10 1494 aa17.46■□□□□ 0.39
CBWD3-208ENST00000612050 PLEKHG5O94827 1062 aa17.45■□□□□ 0.38
CBWD3-208ENST00000612050 NBPF8Q3BBV2 869 aa17.45■□□□□ 0.38
CBWD3-208ENST00000612050 TOPAZ1Q8N9V7 1692 aa17.44■□□□□ 0.38
CBWD3-208ENST00000612050 SLC24A1O60721 1099 aa17.44■□□□□ 0.38
CBWD3-208ENST00000612050 QTRT2Q9H974 415 aaKnown RBP17.44■□□□□ 0.38
CBWD3-208ENST00000612050 TRPC5Q9UL62 973 aaPredicted RBP17.44■□□□□ 0.38
CBWD3-208ENST00000612050 TIMELESSQ9UNS1 1208 aa17.44■□□□□ 0.38
CBWD3-208ENST00000612050 PPIP5K1Q6PFW1 1433 aa17.44■□□□□ 0.38
CBWD3-208ENST00000612050 CABP2Q9NPB3 220 aa17.43■□□□□ 0.38
CBWD3-208ENST00000612050 ACEP12821 1306 aa17.43■□□□□ 0.38
CBWD3-208ENST00000612050 PLEKHG3A1L390 1219 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms