RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 DDX17Q92841 729 aaKnown RBP38.15■■■■□ 3.7
PNKP-216ENST00000601816 LRP6O75581 1613 aa38.15■■■■□ 3.7
PNKP-216ENST00000601816 DHX57Q6P158 1386 aaKnown RBP38.14■■■■□ 3.7
PNKP-216ENST00000601816 LRRC59Q96AG4 307 aaKnown RBP38.13■■■■□ 3.69
PNKP-216ENST00000601816 ORAI2Q96SN7 254 aa38.13■■■■□ 3.69
PNKP-216ENST00000601816 PLEKHH1Q9ULM0 1364 aa38.13■■■■□ 3.69
PNKP-216ENST00000601816 MEX3CQ5U5Q3 659 aaKnown RBP38.1■■■■□ 3.69
PNKP-216ENST00000601816 SIRT1Q96EB6 747 aa38.09■■■■□ 3.69
PNKP-216ENST00000601816 DCAF11Q8TEB1 546 aa38.08■■■■□ 3.69
PNKP-216ENST00000601816 KDM2AQ9Y2K7 1162 aa38.07■■■■□ 3.68
PNKP-216ENST00000601816 POTEAQ6S8J7 498 aa38.06■■■■□ 3.68
PNKP-216ENST00000601816 NUTM2BA6NNL0 878 aaPredicted RBP38.04■■■■□ 3.68
PNKP-216ENST00000601816 NUTM2EB1AL46 878 aaPredicted RBP38.04■■■■□ 3.68
PNKP-216ENST00000601816 NUTM2AQ8IVF1 878 aaPredicted RBP38.04■■■■□ 3.68
PNKP-216ENST00000601816 STAC3Q96MF2 364 aa38.04■■■■□ 3.68
PNKP-216ENST00000601816 ESCO1Q5FWF5 840 aa38.03■■■■□ 3.68
PNKP-216ENST00000601816 PNPLA6Q8IY17 1366 aa38.02■■■■□ 3.68
PNKP-216ENST00000601816 SOS2Q07890 1332 aaPredicted RBP38.01■■■■□ 3.68
PNKP-216ENST00000601816 ADGRB1O14514 1584 aa37.99■■■■□ 3.67
PNKP-216ENST00000601816 NUTM2FA1L443 756 aa37.99■■■■□ 3.67
PNKP-216ENST00000601816 DLC1Q96QB1 1528 aa37.97■■■■□ 3.67
PNKP-216ENST00000601816 PRAM1Q96QH2 718 aa37.97■■■■□ 3.67
PNKP-216ENST00000601816 FMN2Q9NZ56 1722 aa37.97■■■■□ 3.67
PNKP-216ENST00000601816 NPHP3Q7Z494 1330 aa37.96■■■■□ 3.67
PNKP-216ENST00000601816 SAFB2Q14151 953 aaKnown RBP eCLIP37.93■■■■□ 3.66
PNKP-216ENST00000601816 POGKQ9P215 609 aa37.93■■■■□ 3.66
PNKP-216ENST00000601816 ZNF772Q68DY9 489 aaPredicted RBP37.92■■■■□ 3.66
PNKP-216ENST00000601816 FOXO3O43524 673 aa37.89■■■■□ 3.66
PNKP-216ENST00000601816 TRAK1Q9UPV9 953 aa37.89■■■■□ 3.66
PNKP-216ENST00000601816 PXDNQ92626 1479 aa37.87■■■■□ 3.65
PNKP-216ENST00000601816 KIF1AQ12756 1690 aa37.85■■■■□ 3.65
PNKP-216ENST00000601816 XPCQ01831 940 aaPredicted RBP37.83■■■■□ 3.65
PNKP-216ENST00000601816 AFF2P51816 1311 aa37.82■■■■□ 3.64
PNKP-216ENST00000601816 C8orf37Q96NL8 207 aa37.81■■■■□ 3.64
PNKP-216ENST00000601816 ADGRB2O60241 1585 aa37.8■■■■□ 3.64
PNKP-216ENST00000601816 COL22A1Q8NFW1 1626 aaPredicted RBP37.79■■■■□ 3.64
PNKP-216ENST00000601816 ADAMTS2O95450 1211 aa37.78■■■■□ 3.64
PNKP-216ENST00000601816 PHF8Q9UPP1 1060 aa37.76■■■■□ 3.64
PNKP-216ENST00000601816 MINK1Q8N4C8 1332 aaPredicted RBP37.75■■■■□ 3.63
PNKP-216ENST00000601816 ANKARQ7Z5J8 1434 aa37.75■■■■□ 3.63
PNKP-216ENST00000601816 RGPD8O14715 1765 aaPredicted RBP37.75■■■■□ 3.63
PNKP-216ENST00000601816 HIRIP3Q9BW71 556 aaPredicted RBP37.74■■■■□ 3.63
PNKP-216ENST00000601816 KIAA1210Q9ULL0 1709 aa37.71■■■■□ 3.63
PNKP-216ENST00000601816 KRT28Q7Z3Y7 464 aa37.71■■■■□ 3.63
PNKP-216ENST00000601816 NGLY1Q96IV0 654 aa37.71■■■■□ 3.63
PNKP-216ENST00000601816 ARHGEF28Q8N1W1 1705 aaKnown RBP37.7■■■■□ 3.63
PNKP-216ENST00000601816 EIF3AQ14152 1382 aaKnown RBP37.7■■■■□ 3.63
PNKP-216ENST00000601816 RXRBP28702 533 aa37.69■■■■□ 3.62
PNKP-216ENST00000601816 USP32Q8NFA0 1604 aa37.69■■■■□ 3.62
PNKP-216ENST00000601816 SPATA31A3Q5VYP0 1347 aa37.67■■■■□ 3.62
PNKP-216ENST00000601816 WASLO00401 505 aaPredicted RBP37.65■■■■□ 3.62
PNKP-216ENST00000601816 PSME1Q06323 249 aa37.65■■■■□ 3.62
PNKP-216ENST00000601816 TULP4Q9NRJ4 1543 aa37.64■■■■□ 3.62
PNKP-216ENST00000601816 PMFBP1Q8TBY8 1022 aa37.62■■■■□ 3.61
PNKP-216ENST00000601816 SIN3AQ96ST3 1273 aa37.61■■■■□ 3.61
PNKP-216ENST00000601816 QTRT2Q9H974 415 aaKnown RBP37.61■■■■□ 3.61
PNKP-216ENST00000601816 TNS3Q68CZ2 1445 aa37.61■■■■□ 3.61
PNKP-216ENST00000601816 L3MBTL2Q969R5 705 aa37.6■■■■□ 3.61
PNKP-216ENST00000601816 PRR36Q9H6K5 1346 aa37.6■■■■□ 3.61
PNKP-216ENST00000601816 CDK12Q9NYV4 1490 aaPredicted RBP37.59■■■■□ 3.61
PNKP-216ENST00000601816 NBPF1Q3BBV0 1214 aa37.59■■■■□ 3.61
PNKP-216ENST00000601816 SBNO1A3KN83 1393 aa37.58■■■■□ 3.61
PNKP-216ENST00000601816 USP21Q9UK80 565 aa37.57■■■■□ 3.6
PNKP-216ENST00000601816 FNBP4Q8N3X1 1017 aaPredicted RBP37.56■■■■□ 3.6
PNKP-216ENST00000601816 RBM6P78332 1123 aaKnown RBP37.55■■■■□ 3.6
PNKP-216ENST00000601816 NEUROD1Q13562 356 aa37.55■■■■□ 3.6
PNKP-216ENST00000601816 MARF1Q9Y4F3 1742 aaKnown RBP37.54■■■■□ 3.6
PNKP-216ENST00000601816 ARHGEF10O15013 1369 aa37.52■■■■□ 3.6
PNKP-216ENST00000601816 LMOD2Q6P5Q4 547 aa37.51■■■■□ 3.6
PNKP-216ENST00000601816 GPRASP1Q5JY77 1395 aa37.51■■■■□ 3.59
PNKP-216ENST00000601816 TRPC5Q9UL62 973 aaPredicted RBP37.5■■■■□ 3.59
PNKP-216ENST00000601816 ATP7BP35670 1465 aa37.49■■■■□ 3.59
PNKP-216ENST00000601816 HAP1P54257 671 aaPredicted RBP37.48■■■■□ 3.59
PNKP-216ENST00000601816 NUDT16Q96DE0 195 aaKnown RBP37.47■■■■□ 3.59
PNKP-216ENST00000601816 CDK19Q9BWU1 502 aa37.47■■■■□ 3.59
PNKP-216ENST00000601816 RGS12O14924 1447 aa37.46■■■■□ 3.59
PNKP-216ENST00000601816 TRIM26Q12899 539 aaPredicted RBP37.46■■■■□ 3.59
PNKP-216ENST00000601816 NGDNQ8NEJ9 315 aaKnown RBP37.46■■■■□ 3.59
PNKP-216ENST00000601816 ITSN1Q15811 1721 aa37.46■■■■□ 3.59
PNKP-216ENST00000601816 ATRNO75882 1429 aa37.44■■■■□ 3.58
PNKP-216ENST00000601816 TRPM3Q9HCF6 1732 aaPredicted RBP37.44■■■■□ 3.58
PNKP-216ENST00000601816 CABLES1Q8TDN4 633 aa37.44■■■■□ 3.58
PNKP-216ENST00000601816 CENPJQ9HC77 1338 aaPredicted RBP37.43■■■■□ 3.58
PNKP-216ENST00000601816 PLEKHG5O94827 1062 aa37.43■■■■□ 3.58
PNKP-216ENST00000601816 BCL9LQ86UU0 1499 aa37.43■■■■□ 3.58
PNKP-216ENST00000601816 TRPM1Q7Z4N2 1603 aa37.4■■■■□ 3.58
PNKP-216ENST00000601816 ABCA3Q99758 1704 aa37.39■■■■□ 3.58
PNKP-216ENST00000601816 ALS2Q96Q42 1657 aa37.37■■■■□ 3.57
PNKP-216ENST00000601816 SLIT2O94813 1529 aa37.36■■■■□ 3.57
PNKP-216ENST00000601816 CCDC61Q9Y6R9 512 aa37.35■■■■□ 3.57
PNKP-216ENST00000601816 TOPAZ1Q8N9V7 1692 aa37.34■■■■□ 3.57
PNKP-216ENST00000601816 ROCK2O75116 1388 aaKnown RBP37.34■■■■□ 3.57
PNKP-216ENST00000601816 TNKS1BP1Q9C0C2 1729 aaKnown RBP37.34■■■■□ 3.57
PNKP-216ENST00000601816 PAK3O75914 559 aaPredicted RBP37.34■■■■□ 3.57
PNKP-216ENST00000601816 QRICH2Q9H0J4 1663 aa37.34■■■■□ 3.57
PNKP-216ENST00000601816 UNC5CLQ8IV45 518 aa37.33■■■■□ 3.57
PNKP-216ENST00000601816 UPF1Q92900 1129 aaKnown RBP eCLIP37.33■■■■□ 3.57
PNKP-216ENST00000601816 SRPK2P78362 688 aaKnown RBP37.31■■■■□ 3.56
PNKP-216ENST00000601816 POLR3AO14802 1390 aaPredicted RBP37.29■■■■□ 3.56
PNKP-216ENST00000601816 GJD4Q96KN9 370 aaPredicted RBP37.29■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms