RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	COG6	Q9Y2V7	657 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	KIF13A	Q9H1H9	1805 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	ST18	O60284	1047 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	NUCB2	P80303	420 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	IL27	Q8NEV9	243 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	MAGI3	Q5TCQ9	1506 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	FRAT2	O75474	233 aa	Predicted RBP	4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	NSD2	O96028	1365 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	KDM5B	Q9UGL1	1544 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	HMMR	O75330	724 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	ADCY10	Q96PN6	1610 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	ABCC11	Q96J66	1382 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	RGL2	O15211	777 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	SLC4A3	P48751	1232 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	KIAA2012	Q0VF49	1180 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	DUSP27	Q5VZP5	1158 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	POGK	Q9P215	609 aa		4.39	□□□□□ -1.71
VMP1-216	ENST00000592790	RRP9	O43818	475 aa	Known RBP	4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	FGD1	P98174	961 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	TARBP1	Q13395	1621 aa	Known RBP	4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	VGF	O15240	615 aa	Predicted RBP	4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	TRH	P20396	242 aa	Predicted RBP	4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	CCDC173	Q0VFZ6	552 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	SPRYD3	Q8NCJ5	442 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	BRPF3	Q9ULD4	1205 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	RPGRIP1L	Q68CZ1	1315 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	PLB1	Q6P1J6	1458 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	SPDYE4	A6NLX3	237 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	TRAK2	O60296	914 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	NBPF1	Q3BBV0	1214 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	GCC1	Q96CN9	775 aa		4.38	□□□□□ -1.71
VMP1-216	ENST00000592790	CLASP1	Q7Z460	1538 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	HOXD11	P31277	338 aa	Predicted RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	TAF7L	Q5H9L4	462 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	API5	Q9BZZ5	524 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	CEP170	Q5SW79	1584 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	LAMC1	P11047	1609 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	DISP1	Q96F81	1524 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	KIF3B	O15066	747 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	REC8	O95072	547 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	MCM4	P33991	863 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	HDGF	P51858	240 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	SRPK2	P78362	688 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	GZF1	Q9H116	711 aa	Predicted RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	KDM2B	Q8NHM5	1336 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	CROCC2	H7BZ55	1655 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	EIF4G3	O43432	1585 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	GOLGA6L6	A8MZA4	724 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	MVP	Q14764	893 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	ESF1	Q9H501	851 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	PDZRN3	Q9UPQ7	1066 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	KDM6B	O15054	1643 aa		4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	DDX49	Q9Y6V7	483 aa	Known RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	POLR3A	O14802	1390 aa	Predicted RBP	4.37	□□□□□ -1.71
VMP1-216	ENST00000592790	ABCC2	Q92887	1545 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	PER1	O15534	1290 aa	Predicted RBP	4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	MCM2	P49736	904 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	CCDC27	Q2M243	656 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	TCP11L2	Q8N4U5	519 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	PUS7	Q96PZ0	661 aa	Known RBP	4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	CWC22	Q9HCG8	908 aa	Known RBP	4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	HDAC5	Q9UQL6	1122 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	NRDC	O43847	1150 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	DISP3	Q9P2K9	1392 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	FBXO3	Q9UK99	471 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	ATP6V1D	Q9Y5K8	247 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	SYNM	O15061	1565 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	MAST1	Q9Y2H9	1570 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	CDC45	O75419	566 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	MBD3	O95983	291 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	RABEP1	Q15276	862 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	C8orf34	Q49A92	452 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	INTS3	Q68E01	1043 aa	Known RBP	4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	WWC1	Q8IX03	1113 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	PANK1	Q8TE04	598 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	TBC1D32	Q96NH3	1257 aa		4.36	□□□□□ -1.71
VMP1-216	ENST00000592790	IL16	Q14005	1332 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	HTATSF1	O43719	755 aa	Known RBP	4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	GNAI1	P63096	354 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	GRPEL1	Q9HAV7	217 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	PRDM15	P57071	1507 aa	Predicted RBP	4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	ATP10B	O94823	1461 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	DIAPH1	O60610	1272 aa	Known RBP	4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	BCAR3	O75815	825 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	TPM3	P06753	285 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	NASP	P49321	788 aa	Predicted RBP	4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	ALDH1L2	Q3SY69	923 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	CCDC39	Q9UFE4	941 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	LETM1	O95202	739 aa	Predicted RBP	4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	RARS	P54136	660 aa	Known RBP	4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	PDE4C	Q08493	712 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	TESK2	Q96S53	571 aa		4.35	□□□□□ -1.71
VMP1-216	ENST00000592790	RTEL1-TNFRSF6B	F6WH68	1400 aa		4.34	□□□□□ -1.71
VMP1-216	ENST00000592790	ESPN	B1AK53	854 aa		4.34	□□□□□ -1.71
VMP1-216	ENST00000592790	CLCN1	P35523	988 aa		4.34	□□□□□ -1.71
VMP1-216	ENST00000592790	ANKRD45	Q5TZF3	282 aa		4.34	□□□□□ -1.71
VMP1-216	ENST00000592790	ATF7IP	Q6VMQ6	1270 aa		4.34	□□□□□ -1.71
VMP1-216	ENST00000592790	KDM5A	P29375	1690 aa	Known RBP	4.34	□□□□□ -1.71
VMP1-216	ENST00000592790	ATAD2	Q6PL18	1390 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms