RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 C9orf78Q9NZ63 289 aaPredicted RBP18.77■□□□□ 0.6
CIITA-204ENST00000570546 KIAA0586Q9BVV6 1533 aa18.77■□□□□ 0.6
CIITA-204ENST00000570546 FAM184AQ8NB25 1140 aa18.76■□□□□ 0.59
CIITA-204ENST00000570546 SF3A1Q15459 793 aaKnown RBP18.76■□□□□ 0.59
CIITA-204ENST00000570546 TSR2Q969E8 191 aaKnown RBP18.76■□□□□ 0.59
CIITA-204ENST00000570546 NOB1Q9ULX3 412 aaKnown RBP18.76■□□□□ 0.59
CIITA-204ENST00000570546 WDR63Q8IWG1 891 aa18.75■□□□□ 0.59
CIITA-204ENST00000570546 CCDC9Q9Y3X0 531 aaKnown RBP18.75■□□□□ 0.59
CIITA-204ENST00000570546 ZKSCAN1P17029 563 aaPredicted RBP18.75■□□□□ 0.59
CIITA-204ENST00000570546 IFIT2P09913 472 aaKnown RBP18.75■□□□□ 0.59
CIITA-204ENST00000570546 MRE11P49959 708 aa18.75■□□□□ 0.59
CIITA-204ENST00000570546 PRKAR2BP31323 418 aa18.74■□□□□ 0.59
CIITA-204ENST00000570546 OSCARQ8IYS5 282 aa18.74■□□□□ 0.59
CIITA-204ENST00000570546 MSH5O43196 834 aa18.74■□□□□ 0.59
CIITA-204ENST00000570546 CCDC34Q96HJ3 373 aa18.74■□□□□ 0.59
CIITA-204ENST00000570546 TRAK2O60296 914 aa18.74■□□□□ 0.59
CIITA-204ENST00000570546 MAPKBP1O60336 1514 aa18.73■□□□□ 0.59
CIITA-204ENST00000570546 NEXNQ0ZGT2 675 aa18.72■□□□□ 0.59
CIITA-204ENST00000570546 SLFN5Q08AF3 891 aa18.72■□□□□ 0.59
CIITA-204ENST00000570546 BRPF3Q9ULD4 1205 aa18.72■□□□□ 0.59
CIITA-204ENST00000570546 GOLGA6L19H0YKK7 550 aa18.71■□□□□ 0.59
CIITA-204ENST00000570546 ISY1Q9ULR0 285 aaKnown RBP18.71■□□□□ 0.59
CIITA-204ENST00000570546 GCC1Q96CN9 775 aa18.71■□□□□ 0.59
CIITA-204ENST00000570546 CHMP4CQ96CF2 233 aa18.7■□□□□ 0.58
CIITA-204ENST00000570546 ARHGEF11O15085 1522 aa18.7■□□□□ 0.58
CIITA-204ENST00000570546 C1orf115Q9H7X2 142 aa18.7■□□□□ 0.58
CIITA-204ENST00000570546 CT47B1P0C2W7 299 aaPredicted RBP18.7■□□□□ 0.58
CIITA-204ENST00000570546 MVPQ14764 893 aaKnown RBP18.7■□□□□ 0.58
CIITA-204ENST00000570546 CYB5RLQ6IPT4 315 aa18.7■□□□□ 0.58
CIITA-204ENST00000570546 RPRD2Q5VT52 1461 aaKnown RBP18.7■□□□□ 0.58
CIITA-204ENST00000570546 PRAM1Q96QH2 718 aa18.7■□□□□ 0.58
CIITA-204ENST00000570546 CCDC141Q6ZP82 1450 aa18.69■□□□□ 0.58
CIITA-204ENST00000570546 TWISTNBQ3B726 338 aaPredicted RBP18.69■□□□□ 0.58
CIITA-204ENST00000570546 FAM43AQ8N2R8 423 aa18.69■□□□□ 0.58
CIITA-204ENST00000570546 SMC3Q9UQE7 1217 aa18.69■□□□□ 0.58
CIITA-204ENST00000570546 TOMM22Q9NS69 142 aa18.69■□□□□ 0.58
CIITA-204ENST00000570546 HSP90AB4PQ58FF6 505 aa18.68■□□□□ 0.58
CIITA-204ENST00000570546 BECN2A8MW95 431 aa18.68■□□□□ 0.58
CIITA-204ENST00000570546 MAGI1Q96QZ7 1491 aaPredicted RBP18.68■□□□□ 0.58
CIITA-204ENST00000570546 G3BP1Q13283 466 aaKnown RBP eCLIP18.67■□□□□ 0.58
CIITA-204ENST00000570546 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.67■□□□□ 0.58
CIITA-204ENST00000570546 DDX58O95786 925 aaKnown RBP18.67■□□□□ 0.58
CIITA-204ENST00000570546 RNF20Q5VTR2 975 aa18.67■□□□□ 0.58
CIITA-204ENST00000570546 NASPP49321 788 aaPredicted RBP18.67■□□□□ 0.58
CIITA-204ENST00000570546 TTC5Q8N0Z6 440 aa18.66■□□□□ 0.58
CIITA-204ENST00000570546 ATF7IPQ6VMQ6 1270 aa18.66■□□□□ 0.58
CIITA-204ENST00000570546 ERC2O15083 957 aa18.66■□□□□ 0.58
CIITA-204ENST00000570546 WWC1Q8IX03 1113 aa18.66■□□□□ 0.58
CIITA-204ENST00000570546 UBTFL1P0CB47 393 aaPredicted RBP18.66■□□□□ 0.58
CIITA-204ENST00000570546 VPS37CA5D8V6 355 aaPredicted RBP18.65■□□□□ 0.58
CIITA-204ENST00000570546 IL27Q8NEV9 243 aa18.65■□□□□ 0.58
CIITA-204ENST00000570546 RABEP1Q15276 862 aa18.64■□□□□ 0.58
CIITA-204ENST00000570546 LAMC3Q9Y6N6 1575 aa18.64■□□□□ 0.58
CIITA-204ENST00000570546 KIF14Q15058 1648 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 NSD3Q9BZ95 1437 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 C20orf194Q5TEA3 1177 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 CDK19Q9BWU1 502 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 PLB1Q6P1J6 1458 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 FAM69CQ0P6D2 419 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 PSME1Q06323 249 aa18.63■□□□□ 0.57
CIITA-204ENST00000570546 RASSF8Q8NHQ8 419 aa18.62■□□□□ 0.57
CIITA-204ENST00000570546 BICD2Q8TD16 824 aa18.62■□□□□ 0.57
CIITA-204ENST00000570546 GNAI3P08754 354 aa18.62■□□□□ 0.57
CIITA-204ENST00000570546 LRRFIP1Q32MZ4 808 aaKnown RBP18.62■□□□□ 0.57
CIITA-204ENST00000570546 CREBRFQ8IUR6 639 aa18.62■□□□□ 0.57
CIITA-204ENST00000570546 CABP1Q9NZU7 370 aa18.62■□□□□ 0.57
CIITA-204ENST00000570546 CCDC30Q5VVM6 783 aa18.61■□□□□ 0.57
CIITA-204ENST00000570546 CAVIN1Q6NZI2 390 aaKnown RBP18.61■□□□□ 0.57
CIITA-204ENST00000570546 RPGRIP1LQ68CZ1 1315 aa18.6■□□□□ 0.57
CIITA-204ENST00000570546 CHD1LQ86WJ1 897 aa18.6■□□□□ 0.57
CIITA-204ENST00000570546 VSIG10Q8N0Z9 540 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 FAM13BQ9NYF5 915 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 SKAP1Q86WV1 359 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 CNTROBQ8N137 903 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 GAS2L2Q8NHY3 880 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 NEK4P51957 841 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 NKTRP30414 1462 aaKnown RBP18.59■□□□□ 0.57
CIITA-204ENST00000570546 NUTM2GQ5VZR2 741 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 CCDC39Q9UFE4 941 aa18.59■□□□□ 0.57
CIITA-204ENST00000570546 AMER1Q5JTC6 1135 aaPredicted RBP18.58■□□□□ 0.57
CIITA-204ENST00000570546 PTPRKQ15262 1439 aa18.58■□□□□ 0.57
CIITA-204ENST00000570546 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.58■□□□□ 0.56
CIITA-204ENST00000570546 ZNF592Q92610 1267 aa18.58■□□□□ 0.56
CIITA-204ENST00000570546 K7ELQ4 463 aaPredicted RBP18.57■□□□□ 0.56
CIITA-204ENST00000570546 PRPF40AO75400 957 aaKnown RBP18.57■□□□□ 0.56
CIITA-204ENST00000570546 NLRP6P59044 892 aa18.57■□□□□ 0.56
CIITA-204ENST00000570546 MCM2P49736 904 aa18.57■□□□□ 0.56
CIITA-204ENST00000570546 GNAI2P04899 355 aa18.57■□□□□ 0.56
CIITA-204ENST00000570546 SASS6Q6UVJ0 657 aa18.56■□□□□ 0.56
CIITA-204ENST00000570546 UNC13AQ9UPW8 1703 aa18.56■□□□□ 0.56
CIITA-204ENST00000570546 SURF6O75683 361 aaKnown RBP18.56■□□□□ 0.56
CIITA-204ENST00000570546 RNF214Q8ND24 703 aa18.56■□□□□ 0.56
CIITA-204ENST00000570546 SLC4A2P04920 1241 aa18.56■□□□□ 0.56
CIITA-204ENST00000570546 CPLX2Q6PUV4 134 aaKnown RBP18.56■□□□□ 0.56
CIITA-204ENST00000570546 MBD3O95983 291 aa18.56■□□□□ 0.56
CIITA-204ENST00000570546 SYNE3Q6ZMZ3 975 aa18.56■□□□□ 0.56
CIITA-204ENST00000570546 CPLX1O14810 134 aa18.55■□□□□ 0.56
CIITA-204ENST00000570546 RIC3Q7Z5B4 369 aa18.55■□□□□ 0.56
CIITA-204ENST00000570546 ATAD2Q6PL18 1390 aa18.55■□□□□ 0.56
CIITA-204ENST00000570546 TPM3P06753 285 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms