RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 SHPRHQ149N8 1683 aa26.87■■□□□ 1.89
CLN3-214ENST00000565140 RGS17Q9UGC6 210 aaPredicted RBP26.87■■□□□ 1.89
CLN3-214ENST00000565140 CDC42BPGQ6DT37 1551 aa26.86■■□□□ 1.89
CLN3-214ENST00000565140 ORAI2Q96SN7 254 aa26.86■■□□□ 1.89
CLN3-214ENST00000565140 SIRT1Q96EB6 747 aa26.84■■□□□ 1.89
CLN3-214ENST00000565140 SOCS7O14512 581 aa26.82■■□□□ 1.88
CLN3-214ENST00000565140 ADGRB1O14514 1584 aa26.82■■□□□ 1.88
CLN3-214ENST00000565140 STAC3Q96MF2 364 aa26.8■■□□□ 1.88
CLN3-214ENST00000565140 LRP6O75581 1613 aa26.79■■□□□ 1.88
CLN3-214ENST00000565140 SPATA31A6Q5VVP1 1343 aa26.79■■□□□ 1.88
CLN3-214ENST00000565140 FMN2Q9NZ56 1722 aa26.79■■□□□ 1.88
CLN3-214ENST00000565140 RGPD8O14715 1765 aaPredicted RBP26.77■■□□□ 1.88
CLN3-214ENST00000565140 NUTM2FA1L443 756 aa26.77■■□□□ 1.88
CLN3-214ENST00000565140 LRRC59Q96AG4 307 aaKnown RBP26.77■■□□□ 1.88
CLN3-214ENST00000565140 ESCO1Q5FWF5 840 aa26.76■■□□□ 1.87
CLN3-214ENST00000565140 PRAM1Q96QH2 718 aa26.76■■□□□ 1.87
CLN3-214ENST00000565140 DLC1Q96QB1 1528 aa26.75■■□□□ 1.87
CLN3-214ENST00000565140 SAFB2Q14151 953 aaKnown RBP eCLIP26.75■■□□□ 1.87
CLN3-214ENST00000565140 TRAK1Q9UPV9 953 aa26.73■■□□□ 1.87
CLN3-214ENST00000565140 SOS2Q07890 1332 aaPredicted RBP26.72■■□□□ 1.87
CLN3-214ENST00000565140 NUTM2BA6NNL0 878 aaPredicted RBP26.71■■□□□ 1.87
CLN3-214ENST00000565140 NUTM2EB1AL46 878 aaPredicted RBP26.71■■□□□ 1.87
CLN3-214ENST00000565140 POTEAQ6S8J7 498 aa26.71■■□□□ 1.87
CLN3-214ENST00000565140 NUTM2AQ8IVF1 878 aaPredicted RBP26.71■■□□□ 1.87
CLN3-214ENST00000565140 POGKQ9P215 609 aa26.71■■□□□ 1.87
CLN3-214ENST00000565140 PNPLA6Q8IY17 1366 aa26.7■■□□□ 1.86
CLN3-214ENST00000565140 FOXO3O43524 673 aa26.68■■□□□ 1.86
CLN3-214ENST00000565140 MEX3CQ5U5Q3 659 aaKnown RBP26.68■■□□□ 1.86
CLN3-214ENST00000565140 SIN3AQ96ST3 1273 aa26.68■■□□□ 1.86
CLN3-214ENST00000565140 KIAA1210Q9ULL0 1709 aa26.67■■□□□ 1.86
CLN3-214ENST00000565140 ARHGEF28Q8N1W1 1705 aaKnown RBP26.66■■□□□ 1.86
CLN3-214ENST00000565140 XPCQ01831 940 aaPredicted RBP26.65■■□□□ 1.86
CLN3-214ENST00000565140 PXDNQ92626 1479 aa26.65■■□□□ 1.86
CLN3-214ENST00000565140 NPHP3Q7Z494 1330 aa26.65■■□□□ 1.86
CLN3-214ENST00000565140 ADGRB2O60241 1585 aa26.64■■□□□ 1.86
CLN3-214ENST00000565140 TRIM26Q12899 539 aaPredicted RBP26.63■■□□□ 1.85
CLN3-214ENST00000565140 HIRIP3Q9BW71 556 aaPredicted RBP26.63■■□□□ 1.85
CLN3-214ENST00000565140 KIF1AQ12756 1690 aa26.63■■□□□ 1.85
CLN3-214ENST00000565140 MINK1Q8N4C8 1332 aaPredicted RBP26.63■■□□□ 1.85
CLN3-214ENST00000565140 USP32Q8NFA0 1604 aa26.62■■□□□ 1.85
CLN3-214ENST00000565140 L3MBTL2Q969R5 705 aa26.62■■□□□ 1.85
CLN3-214ENST00000565140 NBPF1Q3BBV0 1214 aa26.61■■□□□ 1.85
CLN3-214ENST00000565140 NEUROD1Q13562 356 aa26.6■■□□□ 1.85
CLN3-214ENST00000565140 COL22A1Q8NFW1 1626 aaPredicted RBP26.59■■□□□ 1.85
CLN3-214ENST00000565140 PHF8Q9UPP1 1060 aa26.58■■□□□ 1.85
CLN3-214ENST00000565140 ZNF772Q68DY9 489 aaPredicted RBP26.55■■□□□ 1.84
CLN3-214ENST00000565140 ANKARQ7Z5J8 1434 aa26.55■■□□□ 1.84
CLN3-214ENST00000565140 WASLO00401 505 aaPredicted RBP26.54■■□□□ 1.84
CLN3-214ENST00000565140 ADAMTS2O95450 1211 aa26.54■■□□□ 1.84
CLN3-214ENST00000565140 KRT28Q7Z3Y7 464 aa26.54■■□□□ 1.84
CLN3-214ENST00000565140 C8orf37Q96NL8 207 aa26.53■■□□□ 1.84
CLN3-214ENST00000565140 AFF2P51816 1311 aa26.53■■□□□ 1.84
CLN3-214ENST00000565140 PRR36Q9H6K5 1346 aa26.53■■□□□ 1.84
CLN3-214ENST00000565140 PMFBP1Q8TBY8 1022 aa26.51■■□□□ 1.83
CLN3-214ENST00000565140 TULP4Q9NRJ4 1543 aa26.5■■□□□ 1.83
CLN3-214ENST00000565140 SPATA31A3Q5VYP0 1347 aa26.5■■□□□ 1.83
CLN3-214ENST00000565140 MARF1Q9Y4F3 1742 aaKnown RBP26.49■■□□□ 1.83
CLN3-214ENST00000565140 TRPM1Q7Z4N2 1603 aa26.49■■□□□ 1.83
CLN3-214ENST00000565140 NGLY1Q96IV0 654 aa26.47■■□□□ 1.83
CLN3-214ENST00000565140 EIF3AQ14152 1382 aaKnown RBP26.46■■□□□ 1.83
CLN3-214ENST00000565140 PSME1Q06323 249 aa26.46■■□□□ 1.83
CLN3-214ENST00000565140 CDK19Q9BWU1 502 aa26.44■■□□□ 1.82
CLN3-214ENST00000565140 ITSN1Q15811 1721 aa26.43■■□□□ 1.82
CLN3-214ENST00000565140 TNS3Q68CZ2 1445 aa26.43■■□□□ 1.82
CLN3-214ENST00000565140 TRPM3Q9HCF6 1732 aaPredicted RBP26.42■■□□□ 1.82
CLN3-214ENST00000565140 NUDT16Q96DE0 195 aaKnown RBP26.42■■□□□ 1.82
CLN3-214ENST00000565140 SBNO1A3KN83 1393 aa26.42■■□□□ 1.82
CLN3-214ENST00000565140 ATP7BP35670 1465 aa26.42■■□□□ 1.82
CLN3-214ENST00000565140 RXRBP28702 533 aa26.41■■□□□ 1.82
CLN3-214ENST00000565140 QTRT2Q9H974 415 aaKnown RBP26.41■■□□□ 1.82
CLN3-214ENST00000565140 QRICH2Q9H0J4 1663 aa26.41■■□□□ 1.82
CLN3-214ENST00000565140 NBPF8Q3BBV2 869 aa26.4■■□□□ 1.82
CLN3-214ENST00000565140 CENPJQ9HC77 1338 aaPredicted RBP26.39■■□□□ 1.82
CLN3-214ENST00000565140 FNBP4Q8N3X1 1017 aaPredicted RBP26.39■■□□□ 1.82
CLN3-214ENST00000565140 CABLES1Q8TDN4 633 aa26.38■■□□□ 1.81
CLN3-214ENST00000565140 TOPAZ1Q8N9V7 1692 aa26.38■■□□□ 1.81
CLN3-214ENST00000565140 ABCA3Q99758 1704 aa26.37■■□□□ 1.81
CLN3-214ENST00000565140 LMOD2Q6P5Q4 547 aa26.37■■□□□ 1.81
CLN3-214ENST00000565140 NGDNQ8NEJ9 315 aaKnown RBP26.37■■□□□ 1.81
CLN3-214ENST00000565140 USP21Q9UK80 565 aa26.37■■□□□ 1.81
CLN3-214ENST00000565140 ALS2Q96Q42 1657 aa26.37■■□□□ 1.81
CLN3-214ENST00000565140 PLEKHG5O94827 1062 aa26.36■■□□□ 1.81
CLN3-214ENST00000565140 ROCK2O75116 1388 aaKnown RBP26.35■■□□□ 1.81
CLN3-214ENST00000565140 GPRASP1Q5JY77 1395 aa26.35■■□□□ 1.81
CLN3-214ENST00000565140 ARHGEF10O15013 1369 aa26.33■■□□□ 1.81
CLN3-214ENST00000565140 RBM6P78332 1123 aaKnown RBP26.33■■□□□ 1.81
CLN3-214ENST00000565140 BCL9LQ86UU0 1499 aa26.32■■□□□ 1.8
CLN3-214ENST00000565140 CDK12Q9NYV4 1490 aaPredicted RBP26.32■■□□□ 1.8
CLN3-214ENST00000565140 CCDC61Q9Y6R9 512 aa26.32■■□□□ 1.8
CLN3-214ENST00000565140 TONSLQ96HA7 1378 aa26.31■■□□□ 1.8
CLN3-214ENST00000565140 CABP2Q9NPB3 220 aa26.3■■□□□ 1.8
CLN3-214ENST00000565140 HAP1P54257 671 aaPredicted RBP26.29■■□□□ 1.8
CLN3-214ENST00000565140 SRPK2P78362 688 aaKnown RBP26.29■■□□□ 1.8
CLN3-214ENST00000565140 TRPC5Q9UL62 973 aaPredicted RBP26.29■■□□□ 1.8
CLN3-214ENST00000565140 ATRNO75882 1429 aa26.29■■□□□ 1.8
CLN3-214ENST00000565140 PLEKHG3A1L390 1219 aa26.28■■□□□ 1.8
CLN3-214ENST00000565140 PAK3O75914 559 aaPredicted RBP26.28■■□□□ 1.8
CLN3-214ENST00000565140 ACEP12821 1306 aa26.28■■□□□ 1.8
CLN3-214ENST00000565140 POLR3AO14802 1390 aaPredicted RBP26.28■■□□□ 1.8
CLN3-214ENST00000565140 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms