RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 DHX57Q6P158 1386 aaKnown RBP24.42■■□□□ 1.5
NEDD4-212ENST00000557845 DDX17Q92841 729 aaKnown RBP24.41■■□□□ 1.5
NEDD4-212ENST00000557845 NHSL1Q5SYE7 1610 aa24.41■■□□□ 1.5
NEDD4-212ENST00000557845 ORAI2Q96SN7 254 aa24.4■■□□□ 1.5
NEDD4-212ENST00000557845 PLEKHH1Q9ULM0 1364 aa24.4■■□□□ 1.5
NEDD4-212ENST00000557845 SPATA31A6Q5VVP1 1343 aa24.39■■□□□ 1.5
NEDD4-212ENST00000557845 LRRC59Q96AG4 307 aaKnown RBP24.38■■□□□ 1.49
NEDD4-212ENST00000557845 SHPRHQ149N8 1683 aa24.37■■□□□ 1.49
NEDD4-212ENST00000557845 CDC42BPGQ6DT37 1551 aa24.36■■□□□ 1.49
NEDD4-212ENST00000557845 ESCO1Q5FWF5 840 aa24.33■■□□□ 1.49
NEDD4-212ENST00000557845 NUTM2FA1L443 756 aa24.31■■□□□ 1.48
NEDD4-212ENST00000557845 ADGRB1O14514 1584 aa24.31■■□□□ 1.48
NEDD4-212ENST00000557845 PRAM1Q96QH2 718 aa24.31■■□□□ 1.48
NEDD4-212ENST00000557845 LRP6O75581 1613 aa24.31■■□□□ 1.48
NEDD4-212ENST00000557845 SOS2Q07890 1332 aaPredicted RBP24.31■■□□□ 1.48
NEDD4-212ENST00000557845 NUTM2BA6NNL0 878 aaPredicted RBP24.29■■□□□ 1.48
NEDD4-212ENST00000557845 NUTM2EB1AL46 878 aaPredicted RBP24.29■■□□□ 1.48
NEDD4-212ENST00000557845 MEX3CQ5U5Q3 659 aaKnown RBP24.29■■□□□ 1.48
NEDD4-212ENST00000557845 POTEAQ6S8J7 498 aa24.29■■□□□ 1.48
NEDD4-212ENST00000557845 NUTM2AQ8IVF1 878 aaPredicted RBP24.29■■□□□ 1.48
NEDD4-212ENST00000557845 TRAK1Q9UPV9 953 aa24.29■■□□□ 1.48
NEDD4-212ENST00000557845 SAFB2Q14151 953 aaKnown RBP eCLIP24.28■■□□□ 1.48
NEDD4-212ENST00000557845 POGKQ9P215 609 aa24.28■■□□□ 1.48
NEDD4-212ENST00000557845 DLC1Q96QB1 1528 aa24.28■■□□□ 1.48
NEDD4-212ENST00000557845 FMN2Q9NZ56 1722 aa24.27■■□□□ 1.48
NEDD4-212ENST00000557845 PNPLA6Q8IY17 1366 aa24.26■■□□□ 1.47
NEDD4-212ENST00000557845 FOXO3O43524 673 aa24.25■■□□□ 1.47
NEDD4-212ENST00000557845 NPHP3Q7Z494 1330 aa24.25■■□□□ 1.47
NEDD4-212ENST00000557845 RGPD8O14715 1765 aaPredicted RBP24.22■■□□□ 1.47
NEDD4-212ENST00000557845 XPCQ01831 940 aaPredicted RBP24.19■■□□□ 1.46
NEDD4-212ENST00000557845 ZNF772Q68DY9 489 aaPredicted RBP24.19■■□□□ 1.46
NEDD4-212ENST00000557845 SIN3AQ96ST3 1273 aa24.19■■□□□ 1.46
NEDD4-212ENST00000557845 PXDNQ92626 1479 aa24.18■■□□□ 1.46
NEDD4-212ENST00000557845 HIRIP3Q9BW71 556 aaPredicted RBP24.17■■□□□ 1.46
NEDD4-212ENST00000557845 PHF8Q9UPP1 1060 aa24.17■■□□□ 1.46
NEDD4-212ENST00000557845 MINK1Q8N4C8 1332 aaPredicted RBP24.16■■□□□ 1.46
NEDD4-212ENST00000557845 KIAA1210Q9ULL0 1709 aa24.16■■□□□ 1.46
NEDD4-212ENST00000557845 KIF1AQ12756 1690 aa24.16■■□□□ 1.46
NEDD4-212ENST00000557845 TRIM26Q12899 539 aaPredicted RBP24.15■■□□□ 1.46
NEDD4-212ENST00000557845 L3MBTL2Q969R5 705 aa24.15■■□□□ 1.46
NEDD4-212ENST00000557845 ADGRB2O60241 1585 aa24.15■■□□□ 1.46
NEDD4-212ENST00000557845 NEUROD1Q13562 356 aa24.14■■□□□ 1.45
NEDD4-212ENST00000557845 NBPF1Q3BBV0 1214 aa24.14■■□□□ 1.45
NEDD4-212ENST00000557845 KRT28Q7Z3Y7 464 aa24.14■■□□□ 1.45
NEDD4-212ENST00000557845 ARHGEF28Q8N1W1 1705 aaKnown RBP24.13■■□□□ 1.45
NEDD4-212ENST00000557845 ADAMTS2O95450 1211 aa24.13■■□□□ 1.45
NEDD4-212ENST00000557845 C8orf37Q96NL8 207 aa24.13■■□□□ 1.45
NEDD4-212ENST00000557845 AFF2P51816 1311 aa24.12■■□□□ 1.45
NEDD4-212ENST00000557845 WASLO00401 505 aaPredicted RBP24.12■■□□□ 1.45
NEDD4-212ENST00000557845 COL22A1Q8NFW1 1626 aaPredicted RBP24.12■■□□□ 1.45
NEDD4-212ENST00000557845 ANKARQ7Z5J8 1434 aa24.11■■□□□ 1.45
NEDD4-212ENST00000557845 USP32Q8NFA0 1604 aa24.11■■□□□ 1.45
NEDD4-212ENST00000557845 SPATA31A3Q5VYP0 1347 aa24.1■■□□□ 1.45
NEDD4-212ENST00000557845 PSME1Q06323 249 aa24.09■■□□□ 1.45
NEDD4-212ENST00000557845 PMFBP1Q8TBY8 1022 aa24.09■■□□□ 1.45
NEDD4-212ENST00000557845 NGLY1Q96IV0 654 aa24.09■■□□□ 1.45
NEDD4-212ENST00000557845 EIF3AQ14152 1382 aaKnown RBP24.07■■□□□ 1.44
NEDD4-212ENST00000557845 PRR36Q9H6K5 1346 aa24.07■■□□□ 1.44
NEDD4-212ENST00000557845 TULP4Q9NRJ4 1543 aa24.05■■□□□ 1.44
NEDD4-212ENST00000557845 RXRBP28702 533 aa24.05■■□□□ 1.44
NEDD4-212ENST00000557845 QTRT2Q9H974 415 aaKnown RBP24.04■■□□□ 1.44
NEDD4-212ENST00000557845 CDK19Q9BWU1 502 aa24.02■■□□□ 1.44
NEDD4-212ENST00000557845 SBNO1A3KN83 1393 aa24.02■■□□□ 1.44
NEDD4-212ENST00000557845 FNBP4Q8N3X1 1017 aaPredicted RBP24.01■■□□□ 1.43
NEDD4-212ENST00000557845 MARF1Q9Y4F3 1742 aaKnown RBP24.01■■□□□ 1.43
NEDD4-212ENST00000557845 TNS3Q68CZ2 1445 aa24.01■■□□□ 1.43
NEDD4-212ENST00000557845 NUDT16Q96DE0 195 aaKnown RBP24■■□□□ 1.43
NEDD4-212ENST00000557845 USP21Q9UK80 565 aa24■■□□□ 1.43
NEDD4-212ENST00000557845 LMOD2Q6P5Q4 547 aa23.98■■□□□ 1.43
NEDD4-212ENST00000557845 RBM6P78332 1123 aaKnown RBP23.97■■□□□ 1.43
NEDD4-212ENST00000557845 GPRASP1Q5JY77 1395 aa23.97■■□□□ 1.43
NEDD4-212ENST00000557845 TRPM1Q7Z4N2 1603 aa23.97■■□□□ 1.43
NEDD4-212ENST00000557845 NGDNQ8NEJ9 315 aaKnown RBP23.97■■□□□ 1.43
NEDD4-212ENST00000557845 CENPJQ9HC77 1338 aaPredicted RBP23.97■■□□□ 1.43
NEDD4-212ENST00000557845 ITSN1Q15811 1721 aa23.96■■□□□ 1.43
NEDD4-212ENST00000557845 ATP7BP35670 1465 aa23.95■■□□□ 1.42
NEDD4-212ENST00000557845 ARHGEF10O15013 1369 aa23.95■■□□□ 1.42
NEDD4-212ENST00000557845 CABLES1Q8TDN4 633 aa23.95■■□□□ 1.42
NEDD4-212ENST00000557845 TRPM3Q9HCF6 1732 aaPredicted RBP23.94■■□□□ 1.42
NEDD4-212ENST00000557845 NBPF8Q3BBV2 869 aa23.94■■□□□ 1.42
NEDD4-212ENST00000557845 TRPC5Q9UL62 973 aaPredicted RBP23.94■■□□□ 1.42
NEDD4-212ENST00000557845 CCDC61Q9Y6R9 512 aa23.94■■□□□ 1.42
NEDD4-212ENST00000557845 CDK12Q9NYV4 1490 aaPredicted RBP23.94■■□□□ 1.42
NEDD4-212ENST00000557845 PLEKHG5O94827 1062 aa23.93■■□□□ 1.42
NEDD4-212ENST00000557845 HAP1P54257 671 aaPredicted RBP23.93■■□□□ 1.42
NEDD4-212ENST00000557845 ROCK2O75116 1388 aaKnown RBP23.91■■□□□ 1.42
NEDD4-212ENST00000557845 BCL9LQ86UU0 1499 aa23.91■■□□□ 1.42
NEDD4-212ENST00000557845 QRICH2Q9H0J4 1663 aa23.9■■□□□ 1.42
NEDD4-212ENST00000557845 ALS2Q96Q42 1657 aa23.89■■□□□ 1.42
NEDD4-212ENST00000557845 PLEKHG3A1L390 1219 aa23.89■■□□□ 1.41
NEDD4-212ENST00000557845 PAK3O75914 559 aaPredicted RBP23.89■■□□□ 1.41
NEDD4-212ENST00000557845 SRPK2P78362 688 aaKnown RBP23.89■■□□□ 1.41
NEDD4-212ENST00000557845 TONSLQ96HA7 1378 aa23.89■■□□□ 1.41
NEDD4-212ENST00000557845 ATRNO75882 1429 aa23.88■■□□□ 1.41
NEDD4-212ENST00000557845 CABP2Q9NPB3 220 aa23.88■■□□□ 1.41
NEDD4-212ENST00000557845 TOPAZ1Q8N9V7 1692 aa23.88■■□□□ 1.41
NEDD4-212ENST00000557845 ACEP12821 1306 aa23.87■■□□□ 1.41
NEDD4-212ENST00000557845 SLIT2O94813 1529 aa23.86■■□□□ 1.41
NEDD4-212ENST00000557845 ABCA3Q99758 1704 aa23.86■■□□□ 1.41
NEDD4-212ENST00000557845 POLR3AO14802 1390 aaPredicted RBP23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms