RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 CDC42BPGQ6DT37 1551 aa19.86■□□□□ 0.77
VPS33B-206ENST00000557358 C1orf167Q5SNV9 1468 aa19.86■□□□□ 0.77
VPS33B-206ENST00000557358 MED1Q15648 1581 aaPredicted RBP19.85■□□□□ 0.77
VPS33B-206ENST00000557358 SAFB2Q14151 953 aaKnown RBP eCLIP19.84■□□□□ 0.77
VPS33B-206ENST00000557358 SIN3AQ96ST3 1273 aa19.84■□□□□ 0.77
VPS33B-206ENST00000557358 DLC1Q96QB1 1528 aa19.84■□□□□ 0.77
VPS33B-206ENST00000557358 ESCO1Q5FWF5 840 aa19.83■□□□□ 0.77
VPS33B-206ENST00000557358 LRRC59Q96AG4 307 aaKnown RBP19.83■□□□□ 0.77
VPS33B-206ENST00000557358 PLEKHH1Q9ULM0 1364 aa19.83■□□□□ 0.76
VPS33B-206ENST00000557358 ADGRB1O14514 1584 aa19.82■□□□□ 0.76
VPS33B-206ENST00000557358 KIAA1210Q9ULL0 1709 aa19.82■□□□□ 0.76
VPS33B-206ENST00000557358 L3MBTL2Q969R5 705 aa19.81■□□□□ 0.76
VPS33B-206ENST00000557358 COL16A1Q07092 1604 aaPredicted RBP19.8■□□□□ 0.76
VPS33B-206ENST00000557358 EIF3AQ14152 1382 aaKnown RBP19.8■□□□□ 0.76
VPS33B-206ENST00000557358 SPATA31A6Q5VVP1 1343 aa19.79■□□□□ 0.76
VPS33B-206ENST00000557358 NPHP3Q7Z494 1330 aa19.79■□□□□ 0.76
VPS33B-206ENST00000557358 NUTM2FA1L443 756 aa19.79■□□□□ 0.76
VPS33B-206ENST00000557358 ORAI2Q96SN7 254 aa19.79■□□□□ 0.76
VPS33B-206ENST00000557358 NHSL1Q5SYE7 1610 aa19.78■□□□□ 0.76
VPS33B-206ENST00000557358 MEX3CQ5U5Q3 659 aaKnown RBP19.78■□□□□ 0.76
VPS33B-206ENST00000557358 TONSLQ96HA7 1378 aa19.78■□□□□ 0.76
VPS33B-206ENST00000557358 FMN2Q9NZ56 1722 aa19.75■□□□□ 0.75
VPS33B-206ENST00000557358 MINK1Q8N4C8 1332 aaPredicted RBP19.75■□□□□ 0.75
VPS33B-206ENST00000557358 SHPRHQ149N8 1683 aa19.74■□□□□ 0.75
VPS33B-206ENST00000557358 HIRIP3Q9BW71 556 aaPredicted RBP19.73■□□□□ 0.75
VPS33B-206ENST00000557358 PCGF6Q9BYE7 350 aa19.73■□□□□ 0.75
VPS33B-206ENST00000557358 FOXO3O43524 673 aa19.72■□□□□ 0.75
VPS33B-206ENST00000557358 DDX17Q92841 729 aaKnown RBP19.72■□□□□ 0.75
VPS33B-206ENST00000557358 SOS2Q07890 1332 aaPredicted RBP19.72■□□□□ 0.75
VPS33B-206ENST00000557358 KIF1AQ12756 1690 aa19.71■□□□□ 0.75
VPS33B-206ENST00000557358 ANKARQ7Z5J8 1434 aa19.71■□□□□ 0.75
VPS33B-206ENST00000557358 NUTM2BA6NNL0 878 aaPredicted RBP19.71■□□□□ 0.75
VPS33B-206ENST00000557358 NUTM2EB1AL46 878 aaPredicted RBP19.71■□□□□ 0.75
VPS33B-206ENST00000557358 PSME1Q06323 249 aa19.71■□□□□ 0.75
VPS33B-206ENST00000557358 NBPF1Q3BBV0 1214 aa19.71■□□□□ 0.75
VPS33B-206ENST00000557358 NUTM2AQ8IVF1 878 aaPredicted RBP19.71■□□□□ 0.75
VPS33B-206ENST00000557358 PHF8Q9UPP1 1060 aa19.71■□□□□ 0.75
VPS33B-206ENST00000557358 ARHGEF28Q8N1W1 1705 aaKnown RBP19.71■□□□□ 0.75
VPS33B-206ENST00000557358 ROCK2O75116 1388 aaKnown RBP19.7■□□□□ 0.74
VPS33B-206ENST00000557358 ADGRB2O60241 1585 aa19.7■□□□□ 0.74
VPS33B-206ENST00000557358 WASLO00401 505 aaPredicted RBP19.7■□□□□ 0.74
VPS33B-206ENST00000557358 CENPJQ9HC77 1338 aaPredicted RBP19.68■□□□□ 0.74
VPS33B-206ENST00000557358 PNPLA6Q8IY17 1366 aa19.66■□□□□ 0.74
VPS33B-206ENST00000557358 RGPD8O14715 1765 aaPredicted RBP19.65■□□□□ 0.74
VPS33B-206ENST00000557358 XPCQ01831 940 aaPredicted RBP19.65■□□□□ 0.74
VPS33B-206ENST00000557358 KRT28Q7Z3Y7 464 aa19.65■□□□□ 0.74
VPS33B-206ENST00000557358 CLSPNQ9HAW4 1339 aa19.64■□□□□ 0.73
VPS33B-206ENST00000557358 GPRASP1Q5JY77 1395 aa19.64■□□□□ 0.73
VPS33B-206ENST00000557358 TULP4Q9NRJ4 1543 aa19.64■□□□□ 0.73
VPS33B-206ENST00000557358 TRPM1Q7Z4N2 1603 aa19.64■□□□□ 0.73
VPS33B-206ENST00000557358 ZNF772Q68DY9 489 aaPredicted RBP19.63■□□□□ 0.73
VPS33B-206ENST00000557358 ILDR2Q71H61 639 aa19.63■□□□□ 0.73
VPS33B-206ENST00000557358 NGDNQ8NEJ9 315 aaKnown RBP19.63■□□□□ 0.73
VPS33B-206ENST00000557358 PMFBP1Q8TBY8 1022 aa19.62■□□□□ 0.73
VPS33B-206ENST00000557358 CDK19Q9BWU1 502 aa19.62■□□□□ 0.73
VPS33B-206ENST00000557358 PXDNQ92626 1479 aa19.61■□□□□ 0.73
VPS33B-206ENST00000557358 HAP1P54257 671 aaPredicted RBP19.61■□□□□ 0.73
VPS33B-206ENST00000557358 SRPK2P78362 688 aaKnown RBP19.61■□□□□ 0.73
VPS33B-206ENST00000557358 NUDT16Q96DE0 195 aaKnown RBP19.61■□□□□ 0.73
VPS33B-206ENST00000557358 CARD11Q9BXL7 1154 aa19.61■□□□□ 0.73
VPS33B-206ENST00000557358 ITSN1Q15811 1721 aa19.6■□□□□ 0.73
VPS33B-206ENST00000557358 LMOD2Q6P5Q4 547 aa19.6■□□□□ 0.73
VPS33B-206ENST00000557358 LRP6O75581 1613 aa19.59■□□□□ 0.73
VPS33B-206ENST00000557358 SPATA31A3Q5VYP0 1347 aa19.58■□□□□ 0.73
VPS33B-206ENST00000557358 EVC2Q86UK5 1308 aa19.58■□□□□ 0.73
VPS33B-206ENST00000557358 ADAMTS2O95450 1211 aa19.58■□□□□ 0.72
VPS33B-206ENST00000557358 NBPF8Q3BBV2 869 aa19.58■□□□□ 0.72
VPS33B-206ENST00000557358 C8orf37Q96NL8 207 aa19.58■□□□□ 0.72
VPS33B-206ENST00000557358 CCDC61Q9Y6R9 512 aa19.58■□□□□ 0.72
VPS33B-206ENST00000557358 SBNO1A3KN83 1393 aa19.57■□□□□ 0.72
VPS33B-206ENST00000557358 ARHGEF10O15013 1369 aa19.57■□□□□ 0.72
VPS33B-206ENST00000557358 QRICH2Q9H0J4 1663 aa19.57■□□□□ 0.72
VPS33B-206ENST00000557358 CCER1Q8TC90 406 aaPredicted RBP19.57■□□□□ 0.72
VPS33B-206ENST00000557358 NGLY1Q96IV0 654 aa19.57■□□□□ 0.72
VPS33B-206ENST00000557358 TIMELESSQ9UNS1 1208 aa19.57■□□□□ 0.72
VPS33B-206ENST00000557358 PRR36Q9H6K5 1346 aa19.56■□□□□ 0.72
VPS33B-206ENST00000557358 USP32Q8NFA0 1604 aa19.56■□□□□ 0.72
VPS33B-206ENST00000557358 RGS17Q9UGC6 210 aaPredicted RBP19.56■□□□□ 0.72
VPS33B-206ENST00000557358 TNS3Q68CZ2 1445 aa19.56■□□□□ 0.72
VPS33B-206ENST00000557358 COL22A1Q8NFW1 1626 aaPredicted RBP19.55■□□□□ 0.72
VPS33B-206ENST00000557358 SOCS7O14512 581 aa19.55■□□□□ 0.72
VPS33B-206ENST00000557358 RALGAPBQ86X10 1494 aa19.54■□□□□ 0.72
VPS33B-206ENST00000557358 AFF2P51816 1311 aa19.54■□□□□ 0.72
VPS33B-206ENST00000557358 PAK3O75914 559 aaPredicted RBP19.54■□□□□ 0.72
VPS33B-206ENST00000557358 ATP7BP35670 1465 aa19.54■□□□□ 0.72
VPS33B-206ENST00000557358 SLC24A1O60721 1099 aa19.52■□□□□ 0.72
VPS33B-206ENST00000557358 POTEAQ6S8J7 498 aa19.51■□□□□ 0.71
VPS33B-206ENST00000557358 CABP2Q9NPB3 220 aa19.51■□□□□ 0.71
VPS33B-206ENST00000557358 PLEKHG3A1L390 1219 aa19.5■□□□□ 0.71
VPS33B-206ENST00000557358 RXRBP28702 533 aa19.49■□□□□ 0.71
VPS33B-206ENST00000557358 ACEP12821 1306 aa19.49■□□□□ 0.71
VPS33B-206ENST00000557358 PLEKHG5O94827 1062 aa19.48■□□□□ 0.71
VPS33B-206ENST00000557358 PPIP5K1Q6PFW1 1433 aa19.48■□□□□ 0.71
VPS33B-206ENST00000557358 USP21Q9UK80 565 aa19.47■□□□□ 0.71
VPS33B-206ENST00000557358 POLR3AO14802 1390 aaPredicted RBP19.46■□□□□ 0.71
VPS33B-206ENST00000557358 ATAD2Q6PL18 1390 aa19.46■□□□□ 0.71
VPS33B-206ENST00000557358 SBNO2Q9Y2G9 1366 aa19.46■□□□□ 0.71
VPS33B-206ENST00000557358 QTRT2Q9H974 415 aaKnown RBP19.46■□□□□ 0.71
VPS33B-206ENST00000557358 TOPAZ1Q8N9V7 1692 aa19.46■□□□□ 0.71
VPS33B-206ENST00000557358 TRPC5Q9UL62 973 aaPredicted RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms