RNA–Protein interactions for RNA: ENST00000557285.1

VSX1-207, Transcript of visual system homeobox 1, humanhuman

TSL 3

Gene VSX1, Length 558 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-207ENST00000557285 ORAI2Q96SN7 254 aa24.14■■□□□ 1.45
VSX1-207ENST00000557285 DHX57Q6P158 1386 aaKnown RBP24.14■■□□□ 1.45
VSX1-207ENST00000557285 CDC42BPGQ6DT37 1551 aa24.12■■□□□ 1.45
VSX1-207ENST00000557285 SAFB2Q14151 953 aaKnown RBP eCLIP24.12■■□□□ 1.45
VSX1-207ENST00000557285 SHPRHQ149N8 1683 aa24.11■■□□□ 1.45
VSX1-207ENST00000557285 SOCS7O14512 581 aa24.11■■□□□ 1.45
VSX1-207ENST00000557285 NUTM2BA6NNL0 878 aaPredicted RBP24.1■■□□□ 1.45
VSX1-207ENST00000557285 NUTM2EB1AL46 878 aaPredicted RBP24.1■■□□□ 1.45
VSX1-207ENST00000557285 MEX3CQ5U5Q3 659 aaKnown RBP24.1■■□□□ 1.45
VSX1-207ENST00000557285 NUTM2AQ8IVF1 878 aaPredicted RBP24.1■■□□□ 1.45
VSX1-207ENST00000557285 RGS17Q9UGC6 210 aaPredicted RBP24.1■■□□□ 1.45
VSX1-207ENST00000557285 LRP6O75581 1613 aa24.09■■□□□ 1.45
VSX1-207ENST00000557285 ESCO1Q5FWF5 840 aa24.08■■□□□ 1.45
VSX1-207ENST00000557285 SPATA31A6Q5VVP1 1343 aa24.08■■□□□ 1.44
VSX1-207ENST00000557285 PRAM1Q96QH2 718 aa24.07■■□□□ 1.44
VSX1-207ENST00000557285 POGKQ9P215 609 aa24.06■■□□□ 1.44
VSX1-207ENST00000557285 TRAK1Q9UPV9 953 aa24.06■■□□□ 1.44
VSX1-207ENST00000557285 ADGRB1O14514 1584 aa24.05■■□□□ 1.44
VSX1-207ENST00000557285 LRRC59Q96AG4 307 aaKnown RBP24.05■■□□□ 1.44
VSX1-207ENST00000557285 FMN2Q9NZ56 1722 aa24.04■■□□□ 1.44
VSX1-207ENST00000557285 XPCQ01831 940 aaPredicted RBP24.02■■□□□ 1.44
VSX1-207ENST00000557285 POTEAQ6S8J7 498 aa24.01■■□□□ 1.43
VSX1-207ENST00000557285 SIRT1Q96EB6 747 aa24.01■■□□□ 1.43
VSX1-207ENST00000557285 RGPD8O14715 1765 aaPredicted RBP24■■□□□ 1.43
VSX1-207ENST00000557285 PNPLA6Q8IY17 1366 aa24■■□□□ 1.43
VSX1-207ENST00000557285 DLC1Q96QB1 1528 aa24■■□□□ 1.43
VSX1-207ENST00000557285 FOXO3O43524 673 aa23.99■■□□□ 1.43
VSX1-207ENST00000557285 STAC3Q96MF2 364 aa23.99■■□□□ 1.43
VSX1-207ENST00000557285 HIRIP3Q9BW71 556 aaPredicted RBP23.99■■□□□ 1.43
VSX1-207ENST00000557285 SOS2Q07890 1332 aaPredicted RBP23.98■■□□□ 1.43
VSX1-207ENST00000557285 NEUROD1Q13562 356 aa23.97■■□□□ 1.43
VSX1-207ENST00000557285 MINK1Q8N4C8 1332 aaPredicted RBP23.97■■□□□ 1.43
VSX1-207ENST00000557285 SIN3AQ96ST3 1273 aa23.97■■□□□ 1.43
VSX1-207ENST00000557285 NPHP3Q7Z494 1330 aa23.96■■□□□ 1.43
VSX1-207ENST00000557285 ADAMTS2O95450 1211 aa23.93■■□□□ 1.42
VSX1-207ENST00000557285 PXDNQ92626 1479 aa23.93■■□□□ 1.42
VSX1-207ENST00000557285 ARHGEF28Q8N1W1 1705 aaKnown RBP23.93■■□□□ 1.42
VSX1-207ENST00000557285 KIF1AQ12756 1690 aa23.92■■□□□ 1.42
VSX1-207ENST00000557285 C8orf37Q96NL8 207 aa23.92■■□□□ 1.42
VSX1-207ENST00000557285 TRIM26Q12899 539 aaPredicted RBP23.9■■□□□ 1.42
VSX1-207ENST00000557285 L3MBTL2Q969R5 705 aa23.9■■□□□ 1.42
VSX1-207ENST00000557285 PHF8Q9UPP1 1060 aa23.9■■□□□ 1.42
VSX1-207ENST00000557285 ADGRB2O60241 1585 aa23.9■■□□□ 1.42
VSX1-207ENST00000557285 KIAA1210Q9ULL0 1709 aa23.9■■□□□ 1.42
VSX1-207ENST00000557285 AFF2P51816 1311 aa23.89■■□□□ 1.42
VSX1-207ENST00000557285 NBPF1Q3BBV0 1214 aa23.89■■□□□ 1.41
VSX1-207ENST00000557285 ZNF772Q68DY9 489 aaPredicted RBP23.89■■□□□ 1.41
VSX1-207ENST00000557285 USP32Q8NFA0 1604 aa23.88■■□□□ 1.41
VSX1-207ENST00000557285 PLEKHG5O94827 1062 aa23.87■■□□□ 1.41
VSX1-207ENST00000557285 PMFBP1Q8TBY8 1022 aa23.87■■□□□ 1.41
VSX1-207ENST00000557285 KRT28Q7Z3Y7 464 aa23.86■■□□□ 1.41
VSX1-207ENST00000557285 COL22A1Q8NFW1 1626 aaPredicted RBP23.84■■□□□ 1.41
VSX1-207ENST00000557285 NGLY1Q96IV0 654 aa23.84■■□□□ 1.41
VSX1-207ENST00000557285 ANKARQ7Z5J8 1434 aa23.84■■□□□ 1.41
VSX1-207ENST00000557285 WASLO00401 505 aaPredicted RBP23.83■■□□□ 1.41
VSX1-207ENST00000557285 PSME1Q06323 249 aa23.82■■□□□ 1.4
VSX1-207ENST00000557285 LMOD2Q6P5Q4 547 aa23.82■■□□□ 1.4
VSX1-207ENST00000557285 TULP4Q9NRJ4 1543 aa23.82■■□□□ 1.4
VSX1-207ENST00000557285 PRR36Q9H6K5 1346 aa23.82■■□□□ 1.4
VSX1-207ENST00000557285 EIF3AQ14152 1382 aaKnown RBP23.8■■□□□ 1.4
VSX1-207ENST00000557285 SPATA31A3Q5VYP0 1347 aa23.8■■□□□ 1.4
VSX1-207ENST00000557285 RXRBP28702 533 aa23.77■■□□□ 1.4
VSX1-207ENST00000557285 TNS3Q68CZ2 1445 aa23.76■■□□□ 1.39
VSX1-207ENST00000557285 TRPM1Q7Z4N2 1603 aa23.76■■□□□ 1.39
VSX1-207ENST00000557285 HAP1P54257 671 aaPredicted RBP23.75■■□□□ 1.39
VSX1-207ENST00000557285 CDK19Q9BWU1 502 aa23.75■■□□□ 1.39
VSX1-207ENST00000557285 QTRT2Q9H974 415 aaKnown RBP23.75■■□□□ 1.39
VSX1-207ENST00000557285 MARF1Q9Y4F3 1742 aaKnown RBP23.75■■□□□ 1.39
VSX1-207ENST00000557285 ITSN1Q15811 1721 aa23.74■■□□□ 1.39
VSX1-207ENST00000557285 NGDNQ8NEJ9 315 aaKnown RBP23.74■■□□□ 1.39
VSX1-207ENST00000557285 CABLES1Q8TDN4 633 aa23.74■■□□□ 1.39
VSX1-207ENST00000557285 NUDT16Q96DE0 195 aaKnown RBP23.74■■□□□ 1.39
VSX1-207ENST00000557285 USP21Q9UK80 565 aa23.74■■□□□ 1.39
VSX1-207ENST00000557285 QRICH2Q9H0J4 1663 aa23.73■■□□□ 1.39
VSX1-207ENST00000557285 CENPJQ9HC77 1338 aaPredicted RBP23.73■■□□□ 1.39
VSX1-207ENST00000557285 GPRASP1Q5JY77 1395 aa23.73■■□□□ 1.39
VSX1-207ENST00000557285 ATP7BP35670 1465 aa23.73■■□□□ 1.39
VSX1-207ENST00000557285 SBNO1A3KN83 1393 aa23.72■■□□□ 1.39
VSX1-207ENST00000557285 ROCK2O75116 1388 aaKnown RBP23.72■■□□□ 1.39
VSX1-207ENST00000557285 TRPM3Q9HCF6 1732 aaPredicted RBP23.7■■□□□ 1.39
VSX1-207ENST00000557285 TONSLQ96HA7 1378 aa23.7■■□□□ 1.38
VSX1-207ENST00000557285 PAK3O75914 559 aaPredicted RBP23.7■■□□□ 1.38
VSX1-207ENST00000557285 SRPK2P78362 688 aaKnown RBP23.69■■□□□ 1.38
VSX1-207ENST00000557285 NBPF8Q3BBV2 869 aa23.69■■□□□ 1.38
VSX1-207ENST00000557285 ARHGEF10O15013 1369 aa23.68■■□□□ 1.38
VSX1-207ENST00000557285 ABCA3Q99758 1704 aa23.67■■□□□ 1.38
VSX1-207ENST00000557285 FNBP4Q8N3X1 1017 aaPredicted RBP23.67■■□□□ 1.38
VSX1-207ENST00000557285 RBM6P78332 1123 aaKnown RBP23.66■■□□□ 1.38
VSX1-207ENST00000557285 CABP2Q9NPB3 220 aa23.66■■□□□ 1.38
VSX1-207ENST00000557285 TOPAZ1Q8N9V7 1692 aa23.66■■□□□ 1.38
VSX1-207ENST00000557285 TRPC5Q9UL62 973 aaPredicted RBP23.65■■□□□ 1.38
VSX1-207ENST00000557285 ALS2Q96Q42 1657 aa23.64■■□□□ 1.38
VSX1-207ENST00000557285 RGS12O14924 1447 aa23.63■■□□□ 1.37
VSX1-207ENST00000557285 CCDC61Q9Y6R9 512 aa23.63■■□□□ 1.37
VSX1-207ENST00000557285 BCL9LQ86UU0 1499 aa23.62■■□□□ 1.37
VSX1-207ENST00000557285 CDK12Q9NYV4 1490 aaPredicted RBP23.62■■□□□ 1.37
VSX1-207ENST00000557285 ACEP12821 1306 aa23.61■■□□□ 1.37
VSX1-207ENST00000557285 ATRNO75882 1429 aa23.61■■□□□ 1.37
VSX1-207ENST00000557285 PPIP5K1Q6PFW1 1433 aa23.6■■□□□ 1.37
VSX1-207ENST00000557285 NUTM2GQ5VZR2 741 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms