RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 WAPLQ7Z5K2 1190 aa27.69■■■□□ 2.02
CLIP1-211ENST00000539080 ADGRB1O14514 1584 aa27.68■■■□□ 2.02
CLIP1-211ENST00000539080 SPATA31A6Q5VVP1 1343 aa27.67■■■□□ 2.02
CLIP1-211ENST00000539080 KDM2AQ9Y2K7 1162 aa27.67■■■□□ 2.02
CLIP1-211ENST00000539080 DLC1Q96QB1 1528 aa27.67■■■□□ 2.02
CLIP1-211ENST00000539080 PLEKHH1Q9ULM0 1364 aa27.66■■■□□ 2.02
CLIP1-211ENST00000539080 LRRC59Q96AG4 307 aaKnown RBP27.62■■■□□ 2.01
CLIP1-211ENST00000539080 ORAI2Q96SN7 254 aa27.61■■■□□ 2.01
CLIP1-211ENST00000539080 FMN2Q9NZ56 1722 aa27.61■■■□□ 2.01
CLIP1-211ENST00000539080 SOCS7O14512 581 aa27.58■■■□□ 2.01
CLIP1-211ENST00000539080 PRAM1Q96QH2 718 aa27.57■■■□□ 2
CLIP1-211ENST00000539080 KIAA1210Q9ULL0 1709 aa27.57■■■□□ 2
CLIP1-211ENST00000539080 DDX17Q92841 729 aaKnown RBP27.56■■■□□ 2
CLIP1-211ENST00000539080 RGS17Q9UGC6 210 aaPredicted RBP27.56■■■□□ 2
CLIP1-211ENST00000539080 SOS2Q07890 1332 aaPredicted RBP27.56■■■□□ 2
CLIP1-211ENST00000539080 LRP6O75581 1613 aa27.56■■■□□ 2
CLIP1-211ENST00000539080 ESCO1Q5FWF5 840 aa27.55■■■□□ 2
CLIP1-211ENST00000539080 ADGRB2O60241 1585 aa27.54■■■□□ 2
CLIP1-211ENST00000539080 POGKQ9P215 609 aa27.54■■■□□ 2
CLIP1-211ENST00000539080 NPHP3Q7Z494 1330 aa27.53■■■□□ 2
CLIP1-211ENST00000539080 TRIM26Q12899 539 aaPredicted RBP27.53■■■□□ 2
CLIP1-211ENST00000539080 KIF1AQ12756 1690 aa27.52■■■□□ 2
CLIP1-211ENST00000539080 TRAK1Q9UPV9 953 aa27.52■■■□□ 2
CLIP1-211ENST00000539080 PNPLA6Q8IY17 1366 aa27.51■■□□□ 1.99
CLIP1-211ENST00000539080 ARHGEF28Q8N1W1 1705 aaKnown RBP27.48■■□□□ 1.99
CLIP1-211ENST00000539080 NUTM2FA1L443 756 aa27.48■■□□□ 1.99
CLIP1-211ENST00000539080 SAFB2Q14151 953 aaKnown RBP eCLIP27.48■■□□□ 1.99
CLIP1-211ENST00000539080 MEX3CQ5U5Q3 659 aaKnown RBP27.48■■□□□ 1.99
CLIP1-211ENST00000539080 PXDNQ92626 1479 aa27.47■■□□□ 1.99
CLIP1-211ENST00000539080 ANKARQ7Z5J8 1434 aa27.45■■□□□ 1.98
CLIP1-211ENST00000539080 FOXO3O43524 673 aa27.44■■□□□ 1.98
CLIP1-211ENST00000539080 RGPD8O14715 1765 aaPredicted RBP27.44■■□□□ 1.98
CLIP1-211ENST00000539080 EIF3AQ14152 1382 aaKnown RBP27.44■■□□□ 1.98
CLIP1-211ENST00000539080 COL22A1Q8NFW1 1626 aaPredicted RBP27.44■■□□□ 1.98
CLIP1-211ENST00000539080 NUTM2BA6NNL0 878 aaPredicted RBP27.43■■□□□ 1.98
CLIP1-211ENST00000539080 NUTM2EB1AL46 878 aaPredicted RBP27.43■■□□□ 1.98
CLIP1-211ENST00000539080 NUTM2AQ8IVF1 878 aaPredicted RBP27.43■■□□□ 1.98
CLIP1-211ENST00000539080 L3MBTL2Q969R5 705 aa27.42■■□□□ 1.98
CLIP1-211ENST00000539080 SIN3AQ96ST3 1273 aa27.42■■□□□ 1.98
CLIP1-211ENST00000539080 POTEAQ6S8J7 498 aa27.41■■□□□ 1.98
CLIP1-211ENST00000539080 USP32Q8NFA0 1604 aa27.41■■□□□ 1.98
CLIP1-211ENST00000539080 ZNF772Q68DY9 489 aaPredicted RBP27.4■■□□□ 1.98
CLIP1-211ENST00000539080 PHF8Q9UPP1 1060 aa27.39■■□□□ 1.98
CLIP1-211ENST00000539080 MINK1Q8N4C8 1332 aaPredicted RBP27.39■■□□□ 1.97
CLIP1-211ENST00000539080 TULP4Q9NRJ4 1543 aa27.38■■□□□ 1.97
CLIP1-211ENST00000539080 WASLO00401 505 aaPredicted RBP27.37■■□□□ 1.97
CLIP1-211ENST00000539080 NEUROD1Q13562 356 aa27.37■■□□□ 1.97
CLIP1-211ENST00000539080 HIRIP3Q9BW71 556 aaPredicted RBP27.37■■□□□ 1.97
CLIP1-211ENST00000539080 NBPF1Q3BBV0 1214 aa27.35■■□□□ 1.97
CLIP1-211ENST00000539080 XPCQ01831 940 aaPredicted RBP27.34■■□□□ 1.97
CLIP1-211ENST00000539080 KRT28Q7Z3Y7 464 aa27.33■■□□□ 1.97
CLIP1-211ENST00000539080 TRPM1Q7Z4N2 1603 aa27.33■■□□□ 1.97
CLIP1-211ENST00000539080 PSME1Q06323 249 aa27.32■■□□□ 1.96
CLIP1-211ENST00000539080 SPATA31A3Q5VYP0 1347 aa27.32■■□□□ 1.96
CLIP1-211ENST00000539080 ITSN1Q15811 1721 aa27.3■■□□□ 1.96
CLIP1-211ENST00000539080 C8orf37Q96NL8 207 aa27.3■■□□□ 1.96
CLIP1-211ENST00000539080 AFF2P51816 1311 aa27.3■■□□□ 1.96
CLIP1-211ENST00000539080 PRR36Q9H6K5 1346 aa27.29■■□□□ 1.96
CLIP1-211ENST00000539080 SBNO1A3KN83 1393 aa27.29■■□□□ 1.96
CLIP1-211ENST00000539080 TNS3Q68CZ2 1445 aa27.28■■□□□ 1.96
CLIP1-211ENST00000539080 ADAMTS2O95450 1211 aa27.27■■□□□ 1.96
CLIP1-211ENST00000539080 MARF1Q9Y4F3 1742 aaKnown RBP27.27■■□□□ 1.96
CLIP1-211ENST00000539080 ATP7BP35670 1465 aa27.26■■□□□ 1.95
CLIP1-211ENST00000539080 PMFBP1Q8TBY8 1022 aa27.26■■□□□ 1.95
CLIP1-211ENST00000539080 CENPJQ9HC77 1338 aaPredicted RBP27.24■■□□□ 1.95
CLIP1-211ENST00000539080 NGLY1Q96IV0 654 aa27.24■■□□□ 1.95
CLIP1-211ENST00000539080 ARHGEF10O15013 1369 aa27.23■■□□□ 1.95
CLIP1-211ENST00000539080 CDK19Q9BWU1 502 aa27.23■■□□□ 1.95
CLIP1-211ENST00000539080 GPRASP1Q5JY77 1395 aa27.22■■□□□ 1.95
CLIP1-211ENST00000539080 TRPM3Q9HCF6 1732 aaPredicted RBP27.22■■□□□ 1.95
CLIP1-211ENST00000539080 QRICH2Q9H0J4 1663 aa27.22■■□□□ 1.95
CLIP1-211ENST00000539080 NUDT16Q96DE0 195 aaKnown RBP27.22■■□□□ 1.95
CLIP1-211ENST00000539080 ROCK2O75116 1388 aaKnown RBP27.22■■□□□ 1.95
CLIP1-211ENST00000539080 TONSLQ96HA7 1378 aa27.21■■□□□ 1.95
CLIP1-211ENST00000539080 TOPAZ1Q8N9V7 1692 aa27.21■■□□□ 1.95
CLIP1-211ENST00000539080 CDK12Q9NYV4 1490 aaPredicted RBP27.2■■□□□ 1.95
CLIP1-211ENST00000539080 RXRBP28702 533 aa27.2■■□□□ 1.94
CLIP1-211ENST00000539080 FNBP4Q8N3X1 1017 aaPredicted RBP27.2■■□□□ 1.94
CLIP1-211ENST00000539080 NGDNQ8NEJ9 315 aaKnown RBP27.18■■□□□ 1.94
CLIP1-211ENST00000539080 ALS2Q96Q42 1657 aa27.17■■□□□ 1.94
CLIP1-211ENST00000539080 QTRT2Q9H974 415 aaKnown RBP27.17■■□□□ 1.94
CLIP1-211ENST00000539080 CCDC61Q9Y6R9 512 aa27.17■■□□□ 1.94
CLIP1-211ENST00000539080 USP21Q9UK80 565 aa27.16■■□□□ 1.94
CLIP1-211ENST00000539080 NBPF8Q3BBV2 869 aa27.15■■□□□ 1.94
CLIP1-211ENST00000539080 ABCA3Q99758 1704 aa27.15■■□□□ 1.94
CLIP1-211ENST00000539080 RBM6P78332 1123 aaKnown RBP27.14■■□□□ 1.94
CLIP1-211ENST00000539080 POLR3AO14802 1390 aaPredicted RBP27.13■■□□□ 1.93
CLIP1-211ENST00000539080 LMOD2Q6P5Q4 547 aa27.13■■□□□ 1.93
CLIP1-211ENST00000539080 PLEKHG3A1L390 1219 aa27.12■■□□□ 1.93
CLIP1-211ENST00000539080 TRPC5Q9UL62 973 aaPredicted RBP27.12■■□□□ 1.93
CLIP1-211ENST00000539080 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.11■■□□□ 1.93
CLIP1-211ENST00000539080 HAP1P54257 671 aaPredicted RBP27.11■■□□□ 1.93
CLIP1-211ENST00000539080 SRPK2P78362 688 aaKnown RBP27.11■■□□□ 1.93
CLIP1-211ENST00000539080 RALGAPBQ86X10 1494 aa27.11■■□□□ 1.93
CLIP1-211ENST00000539080 BCL9LQ86UU0 1499 aa27.1■■□□□ 1.93
CLIP1-211ENST00000539080 ATRNO75882 1429 aa27.09■■□□□ 1.93
CLIP1-211ENST00000539080 SLIT2O94813 1529 aa27.08■■□□□ 1.93
CLIP1-211ENST00000539080 ACEP12821 1306 aa27.08■■□□□ 1.93
CLIP1-211ENST00000539080 EVC2Q86UK5 1308 aa27.08■■□□□ 1.93
CLIP1-211ENST00000539080 CABLES1Q8TDN4 633 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms