RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-215ENST00000538176 WAPLQ7Z5K2 1190 aa31.28■■■□□ 2.6
CCDC78-215ENST00000538176 NHSL1Q5SYE7 1610 aa31.25■■■□□ 2.59
CCDC78-215ENST00000538176 KDM2AQ9Y2K7 1162 aa31.25■■■□□ 2.59
CCDC78-215ENST00000538176 CDC42BPGQ6DT37 1551 aa31.25■■■□□ 2.59
CCDC78-215ENST00000538176 SHPRHQ149N8 1683 aa31.23■■■□□ 2.59
CCDC78-215ENST00000538176 RGS17Q9UGC6 210 aaPredicted RBP31.23■■■□□ 2.59
CCDC78-215ENST00000538176 ORAI2Q96SN7 254 aa31.22■■■□□ 2.59
CCDC78-215ENST00000538176 ESCO1Q5FWF5 840 aa31.19■■■□□ 2.58
CCDC78-215ENST00000538176 SOS2Q07890 1332 aaPredicted RBP31.18■■■□□ 2.58
CCDC78-215ENST00000538176 PLEKHH1Q9ULM0 1364 aa31.17■■■□□ 2.58
CCDC78-215ENST00000538176 MEX3CQ5U5Q3 659 aaKnown RBP31.17■■■□□ 2.58
CCDC78-215ENST00000538176 DLC1Q96QB1 1528 aa31.16■■■□□ 2.58
CCDC78-215ENST00000538176 POGKQ9P215 609 aa31.16■■■□□ 2.58
CCDC78-215ENST00000538176 NPHP3Q7Z494 1330 aa31.16■■■□□ 2.58
CCDC78-215ENST00000538176 DDX17Q92841 729 aaKnown RBP31.14■■■□□ 2.58
CCDC78-215ENST00000538176 PRAM1Q96QH2 718 aa31.14■■■□□ 2.58
CCDC78-215ENST00000538176 ADGRB1O14514 1584 aa31.12■■■□□ 2.57
CCDC78-215ENST00000538176 ZNF772Q68DY9 489 aaPredicted RBP31.11■■■□□ 2.57
CCDC78-215ENST00000538176 PNPLA6Q8IY17 1366 aa31.09■■■□□ 2.57
CCDC78-215ENST00000538176 TRAK1Q9UPV9 953 aa31.09■■■□□ 2.57
CCDC78-215ENST00000538176 NUTM2BA6NNL0 878 aaPredicted RBP31.08■■■□□ 2.57
CCDC78-215ENST00000538176 NUTM2EB1AL46 878 aaPredicted RBP31.08■■■□□ 2.57
CCDC78-215ENST00000538176 NUTM2AQ8IVF1 878 aaPredicted RBP31.08■■■□□ 2.57
CCDC78-215ENST00000538176 LRP6O75581 1613 aa31.08■■■□□ 2.57
CCDC78-215ENST00000538176 POTEAQ6S8J7 498 aa31.07■■■□□ 2.56
CCDC78-215ENST00000538176 NUTM2FA1L443 756 aa31.06■■■□□ 2.56
CCDC78-215ENST00000538176 FOXO3O43524 673 aa31.06■■■□□ 2.56
CCDC78-215ENST00000538176 FMN2Q9NZ56 1722 aa31.05■■■□□ 2.56
CCDC78-215ENST00000538176 SAFB2Q14151 953 aaKnown RBP eCLIP31.04■■■□□ 2.56
CCDC78-215ENST00000538176 EIF3AQ14152 1382 aaKnown RBP31.01■■■□□ 2.55
CCDC78-215ENST00000538176 PHF8Q9UPP1 1060 aa30.99■■■□□ 2.55
CCDC78-215ENST00000538176 KIF1AQ12756 1690 aa30.99■■■□□ 2.55
CCDC78-215ENST00000538176 KIAA1210Q9ULL0 1709 aa30.98■■■□□ 2.55
CCDC78-215ENST00000538176 ANKARQ7Z5J8 1434 aa30.98■■■□□ 2.55
CCDC78-215ENST00000538176 PSME1Q06323 249 aa30.97■■■□□ 2.55
CCDC78-215ENST00000538176 TRIM26Q12899 539 aaPredicted RBP30.97■■■□□ 2.55
CCDC78-215ENST00000538176 PXDNQ92626 1479 aa30.96■■■□□ 2.55
CCDC78-215ENST00000538176 ADGRB2O60241 1585 aa30.96■■■□□ 2.55
CCDC78-215ENST00000538176 WASLO00401 505 aaPredicted RBP30.93■■■□□ 2.54
CCDC78-215ENST00000538176 KRT28Q7Z3Y7 464 aa30.93■■■□□ 2.54
CCDC78-215ENST00000538176 C8orf37Q96NL8 207 aa30.92■■■□□ 2.54
CCDC78-215ENST00000538176 AFF2P51816 1311 aa30.92■■■□□ 2.54
CCDC78-215ENST00000538176 MINK1Q8N4C8 1332 aaPredicted RBP30.92■■■□□ 2.54
CCDC78-215ENST00000538176 L3MBTL2Q969R5 705 aa30.91■■■□□ 2.54
CCDC78-215ENST00000538176 NGLY1Q96IV0 654 aa30.91■■■□□ 2.54
CCDC78-215ENST00000538176 COL22A1Q8NFW1 1626 aaPredicted RBP30.91■■■□□ 2.54
CCDC78-215ENST00000538176 XPCQ01831 940 aaPredicted RBP30.9■■■□□ 2.54
CCDC78-215ENST00000538176 HIRIP3Q9BW71 556 aaPredicted RBP30.9■■■□□ 2.54
CCDC78-215ENST00000538176 SPATA31A3Q5VYP0 1347 aa30.9■■■□□ 2.54
CCDC78-215ENST00000538176 ADAMTS2O95450 1211 aa30.89■■■□□ 2.54
CCDC78-215ENST00000538176 SIN3AQ96ST3 1273 aa30.89■■■□□ 2.54
CCDC78-215ENST00000538176 RXRBP28702 533 aa30.88■■■□□ 2.53
CCDC78-215ENST00000538176 RGPD8O14715 1765 aaPredicted RBP30.87■■■□□ 2.53
CCDC78-215ENST00000538176 NEUROD1Q13562 356 aa30.86■■■□□ 2.53
CCDC78-215ENST00000538176 ARHGEF28Q8N1W1 1705 aaKnown RBP30.85■■■□□ 2.53
CCDC78-215ENST00000538176 SBNO1A3KN83 1393 aa30.85■■■□□ 2.53
CCDC78-215ENST00000538176 NBPF1Q3BBV0 1214 aa30.85■■■□□ 2.53
CCDC78-215ENST00000538176 TULP4Q9NRJ4 1543 aa30.83■■■□□ 2.53
CCDC78-215ENST00000538176 FNBP4Q8N3X1 1017 aaPredicted RBP30.82■■■□□ 2.52
CCDC78-215ENST00000538176 PMFBP1Q8TBY8 1022 aa30.82■■■□□ 2.52
CCDC78-215ENST00000538176 QTRT2Q9H974 415 aaKnown RBP30.82■■■□□ 2.52
CCDC78-215ENST00000538176 GPRASP1Q5JY77 1395 aa30.8■■■□□ 2.52
CCDC78-215ENST00000538176 USP32Q8NFA0 1604 aa30.8■■■□□ 2.52
CCDC78-215ENST00000538176 ARHGEF10O15013 1369 aa30.79■■■□□ 2.52
CCDC78-215ENST00000538176 RBM6P78332 1123 aaKnown RBP30.79■■■□□ 2.52
CCDC78-215ENST00000538176 TNS3Q68CZ2 1445 aa30.79■■■□□ 2.52
CCDC78-215ENST00000538176 USP21Q9UK80 565 aa30.78■■■□□ 2.52
CCDC78-215ENST00000538176 PRR36Q9H6K5 1346 aa30.77■■■□□ 2.52
CCDC78-215ENST00000538176 CDK12Q9NYV4 1490 aaPredicted RBP30.77■■■□□ 2.52
CCDC78-215ENST00000538176 NUDT16Q96DE0 195 aaKnown RBP30.77■■■□□ 2.52
CCDC78-215ENST00000538176 CDK19Q9BWU1 502 aa30.77■■■□□ 2.52
CCDC78-215ENST00000538176 NGDNQ8NEJ9 315 aaKnown RBP30.76■■■□□ 2.51
CCDC78-215ENST00000538176 TRPC5Q9UL62 973 aaPredicted RBP30.76■■■□□ 2.51
CCDC78-215ENST00000538176 CENPJQ9HC77 1338 aaPredicted RBP30.75■■■□□ 2.51
CCDC78-215ENST00000538176 CCDC61Q9Y6R9 512 aa30.74■■■□□ 2.51
CCDC78-215ENST00000538176 HAP1P54257 671 aaPredicted RBP30.73■■■□□ 2.51
CCDC78-215ENST00000538176 LMOD2Q6P5Q4 547 aa30.72■■■□□ 2.51
CCDC78-215ENST00000538176 ITSN1Q15811 1721 aa30.7■■■□□ 2.5
CCDC78-215ENST00000538176 MARF1Q9Y4F3 1742 aaKnown RBP30.69■■■□□ 2.5
CCDC78-215ENST00000538176 ATP7BP35670 1465 aa30.69■■■□□ 2.5
CCDC78-215ENST00000538176 ROCK2O75116 1388 aaKnown RBP30.67■■■□□ 2.5
CCDC78-215ENST00000538176 PLEKHG3A1L390 1219 aa30.66■■■□□ 2.5
CCDC78-215ENST00000538176 TRPM1Q7Z4N2 1603 aa30.65■■■□□ 2.5
CCDC78-215ENST00000538176 TONSLQ96HA7 1378 aa30.65■■■□□ 2.5
CCDC78-215ENST00000538176 SRPK2P78362 688 aaKnown RBP30.64■■■□□ 2.5
CCDC78-215ENST00000538176 BCL9LQ86UU0 1499 aa30.63■■■□□ 2.49
CCDC78-215ENST00000538176 PAK3O75914 559 aaPredicted RBP30.62■■■□□ 2.49
CCDC78-215ENST00000538176 UNC5CLQ8IV45 518 aa30.62■■■□□ 2.49
CCDC78-215ENST00000538176 POLR3AO14802 1390 aaPredicted RBP30.62■■■□□ 2.49
CCDC78-215ENST00000538176 ATRNO75882 1429 aa30.62■■■□□ 2.49
CCDC78-215ENST00000538176 CABLES1Q8TDN4 633 aa30.61■■■□□ 2.49
CCDC78-215ENST00000538176 TRPM3Q9HCF6 1732 aaPredicted RBP30.61■■■□□ 2.49
CCDC78-215ENST00000538176 NBPF8Q3BBV2 869 aa30.6■■■□□ 2.49
CCDC78-215ENST00000538176 ACEP12821 1306 aa30.59■■■□□ 2.49
CCDC78-215ENST00000538176 EVC2Q86UK5 1308 aa30.59■■■□□ 2.49
CCDC78-215ENST00000538176 SLIT2O94813 1529 aa30.58■■■□□ 2.49
CCDC78-215ENST00000538176 GJD4Q96KN9 370 aaPredicted RBP30.57■■■□□ 2.48
CCDC78-215ENST00000538176 ALS2Q96Q42 1657 aa30.56■■■□□ 2.48
CCDC78-215ENST00000538176 QRICH2Q9H0J4 1663 aa30.55■■■□□ 2.48
CCDC78-215ENST00000538176 CABP2Q9NPB3 220 aa30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms