RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 WAPLQ7Z5K2 1190 aa19.47■□□□□ 0.71
VPS28-211ENST00000530790 PLEKHH1Q9ULM0 1364 aa19.46■□□□□ 0.71
VPS28-211ENST00000530790 RGS17Q9UGC6 210 aaPredicted RBP19.46■□□□□ 0.71
VPS28-211ENST00000530790 MEX3CQ5U5Q3 659 aaKnown RBP19.44■□□□□ 0.7
VPS28-211ENST00000530790 DCAF11Q8TEB1 546 aa19.44■□□□□ 0.7
VPS28-211ENST00000530790 DDX17Q92841 729 aaKnown RBP19.44■□□□□ 0.7
VPS28-211ENST00000530790 LRRC59Q96AG4 307 aaKnown RBP19.44■□□□□ 0.7
VPS28-211ENST00000530790 ORAI2Q96SN7 254 aa19.44■□□□□ 0.7
VPS28-211ENST00000530790 STAC3Q96MF2 364 aa19.43■□□□□ 0.7
VPS28-211ENST00000530790 ADGRB1O14514 1584 aa19.43■□□□□ 0.7
VPS28-211ENST00000530790 DLC1Q96QB1 1528 aa19.42■□□□□ 0.7
VPS28-211ENST00000530790 SIRT1Q96EB6 747 aa19.42■□□□□ 0.7
VPS28-211ENST00000530790 KDM2AQ9Y2K7 1162 aa19.42■□□□□ 0.7
VPS28-211ENST00000530790 FMN2Q9NZ56 1722 aa19.41■□□□□ 0.7
VPS28-211ENST00000530790 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
VPS28-211ENST00000530790 ESCO1Q5FWF5 840 aa19.4■□□□□ 0.7
VPS28-211ENST00000530790 NUTM2BA6NNL0 878 aaPredicted RBP19.39■□□□□ 0.69
VPS28-211ENST00000530790 NUTM2EB1AL46 878 aaPredicted RBP19.39■□□□□ 0.69
VPS28-211ENST00000530790 NUTM2AQ8IVF1 878 aaPredicted RBP19.39■□□□□ 0.69
VPS28-211ENST00000530790 PRAM1Q96QH2 718 aa19.39■□□□□ 0.69
VPS28-211ENST00000530790 SOS2Q07890 1332 aaPredicted RBP19.39■□□□□ 0.69
VPS28-211ENST00000530790 NPHP3Q7Z494 1330 aa19.39■□□□□ 0.69
VPS28-211ENST00000530790 NUTM2FA1L443 756 aa19.37■□□□□ 0.69
VPS28-211ENST00000530790 POTEAQ6S8J7 498 aa19.37■□□□□ 0.69
VPS28-211ENST00000530790 KIF1AQ12756 1690 aa19.36■□□□□ 0.69
VPS28-211ENST00000530790 SAFB2Q14151 953 aaKnown RBP eCLIP19.36■□□□□ 0.69
VPS28-211ENST00000530790 POGKQ9P215 609 aa19.36■□□□□ 0.69
VPS28-211ENST00000530790 ADGRB2O60241 1585 aa19.36■□□□□ 0.69
VPS28-211ENST00000530790 PXDNQ92626 1479 aa19.35■□□□□ 0.69
VPS28-211ENST00000530790 ZNF772Q68DY9 489 aaPredicted RBP19.34■□□□□ 0.69
VPS28-211ENST00000530790 TRAK1Q9UPV9 953 aa19.34■□□□□ 0.69
VPS28-211ENST00000530790 COL22A1Q8NFW1 1626 aaPredicted RBP19.33■□□□□ 0.68
VPS28-211ENST00000530790 FOXO3O43524 673 aa19.32■□□□□ 0.68
VPS28-211ENST00000530790 XPCQ01831 940 aaPredicted RBP19.3■□□□□ 0.68
VPS28-211ENST00000530790 ANKARQ7Z5J8 1434 aa19.3■□□□□ 0.68
VPS28-211ENST00000530790 ARHGEF28Q8N1W1 1705 aaKnown RBP19.29■□□□□ 0.68
VPS28-211ENST00000530790 KIAA1210Q9ULL0 1709 aa19.29■□□□□ 0.68
VPS28-211ENST00000530790 EIF3AQ14152 1382 aaKnown RBP19.29■□□□□ 0.68
VPS28-211ENST00000530790 AFF2P51816 1311 aa19.28■□□□□ 0.68
VPS28-211ENST00000530790 C8orf37Q96NL8 207 aa19.28■□□□□ 0.68
VPS28-211ENST00000530790 HIRIP3Q9BW71 556 aaPredicted RBP19.27■□□□□ 0.68
VPS28-211ENST00000530790 PHF8Q9UPP1 1060 aa19.27■□□□□ 0.68
VPS28-211ENST00000530790 MINK1Q8N4C8 1332 aaPredicted RBP19.26■□□□□ 0.67
VPS28-211ENST00000530790 USP32Q8NFA0 1604 aa19.26■□□□□ 0.67
VPS28-211ENST00000530790 ADAMTS2O95450 1211 aa19.26■□□□□ 0.67
VPS28-211ENST00000530790 TULP4Q9NRJ4 1543 aa19.25■□□□□ 0.67
VPS28-211ENST00000530790 RGPD8O14715 1765 aaPredicted RBP19.25■□□□□ 0.67
VPS28-211ENST00000530790 TNS3Q68CZ2 1445 aa19.23■□□□□ 0.67
VPS28-211ENST00000530790 KRT28Q7Z3Y7 464 aa19.22■□□□□ 0.67
VPS28-211ENST00000530790 NGLY1Q96IV0 654 aa19.22■□□□□ 0.67
VPS28-211ENST00000530790 SPATA31A3Q5VYP0 1347 aa19.22■□□□□ 0.67
VPS28-211ENST00000530790 WASLO00401 505 aaPredicted RBP19.21■□□□□ 0.67
VPS28-211ENST00000530790 PSME1Q06323 249 aa19.21■□□□□ 0.67
VPS28-211ENST00000530790 RXRBP28702 533 aa19.2■□□□□ 0.66
VPS28-211ENST00000530790 PMFBP1Q8TBY8 1022 aa19.19■□□□□ 0.66
VPS28-211ENST00000530790 L3MBTL2Q969R5 705 aa19.19■□□□□ 0.66
VPS28-211ENST00000530790 SIN3AQ96ST3 1273 aa19.19■□□□□ 0.66
VPS28-211ENST00000530790 CDK12Q9NYV4 1490 aaPredicted RBP19.19■□□□□ 0.66
VPS28-211ENST00000530790 PRR36Q9H6K5 1346 aa19.19■□□□□ 0.66
VPS28-211ENST00000530790 SBNO1A3KN83 1393 aa19.19■□□□□ 0.66
VPS28-211ENST00000530790 ATP7BP35670 1465 aa19.18■□□□□ 0.66
VPS28-211ENST00000530790 NBPF1Q3BBV0 1214 aa19.18■□□□□ 0.66
VPS28-211ENST00000530790 ITSN1Q15811 1721 aa19.17■□□□□ 0.66
VPS28-211ENST00000530790 MARF1Q9Y4F3 1742 aaKnown RBP19.17■□□□□ 0.66
VPS28-211ENST00000530790 NEUROD1Q13562 356 aa19.17■□□□□ 0.66
VPS28-211ENST00000530790 ARHGEF10O15013 1369 aa19.17■□□□□ 0.66
VPS28-211ENST00000530790 TRIM26Q12899 539 aaPredicted RBP19.16■□□□□ 0.66
VPS28-211ENST00000530790 USP21Q9UK80 565 aa19.16■□□□□ 0.66
VPS28-211ENST00000530790 GPRASP1Q5JY77 1395 aa19.16■□□□□ 0.66
VPS28-211ENST00000530790 QTRT2Q9H974 415 aaKnown RBP19.15■□□□□ 0.66
VPS28-211ENST00000530790 TRPM1Q7Z4N2 1603 aa19.14■□□□□ 0.66
VPS28-211ENST00000530790 HAP1P54257 671 aaPredicted RBP19.14■□□□□ 0.65
VPS28-211ENST00000530790 RBM6P78332 1123 aaKnown RBP19.14■□□□□ 0.65
VPS28-211ENST00000530790 LMOD2Q6P5Q4 547 aa19.14■□□□□ 0.65
VPS28-211ENST00000530790 FNBP4Q8N3X1 1017 aaPredicted RBP19.14■□□□□ 0.65
VPS28-211ENST00000530790 TRPM3Q9HCF6 1732 aaPredicted RBP19.14■□□□□ 0.65
VPS28-211ENST00000530790 RGS12O14924 1447 aa19.13■□□□□ 0.65
VPS28-211ENST00000530790 ABCA3Q99758 1704 aa19.13■□□□□ 0.65
VPS28-211ENST00000530790 TOPAZ1Q8N9V7 1692 aa19.12■□□□□ 0.65
VPS28-211ENST00000530790 CENPJQ9HC77 1338 aaPredicted RBP19.12■□□□□ 0.65
VPS28-211ENST00000530790 NGDNQ8NEJ9 315 aaKnown RBP19.12■□□□□ 0.65
VPS28-211ENST00000530790 TRPC5Q9UL62 973 aaPredicted RBP19.12■□□□□ 0.65
VPS28-211ENST00000530790 QRICH2Q9H0J4 1663 aa19.11■□□□□ 0.65
VPS28-211ENST00000530790 ATRNO75882 1429 aa19.11■□□□□ 0.65
VPS28-211ENST00000530790 ROCK2O75116 1388 aaKnown RBP19.11■□□□□ 0.65
VPS28-211ENST00000530790 NUDT16Q96DE0 195 aaKnown RBP19.11■□□□□ 0.65
VPS28-211ENST00000530790 CDK19Q9BWU1 502 aa19.11■□□□□ 0.65
VPS28-211ENST00000530790 ALS2Q96Q42 1657 aa19.1■□□□□ 0.65
VPS28-211ENST00000530790 BCL9LQ86UU0 1499 aa19.09■□□□□ 0.65
VPS28-211ENST00000530790 PLEKHG5O94827 1062 aa19.09■□□□□ 0.65
VPS28-211ENST00000530790 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.08■□□□□ 0.65
VPS28-211ENST00000530790 CABLES1Q8TDN4 633 aa19.08■□□□□ 0.64
VPS28-211ENST00000530790 SLIT2O94813 1529 aa19.08■□□□□ 0.64
VPS28-211ENST00000530790 TONSLQ96HA7 1378 aa19.06■□□□□ 0.64
VPS28-211ENST00000530790 SRPK2P78362 688 aaKnown RBP19.06■□□□□ 0.64
VPS28-211ENST00000530790 CCDC61Q9Y6R9 512 aa19.06■□□□□ 0.64
VPS28-211ENST00000530790 POLR3AO14802 1390 aaPredicted RBP19.06■□□□□ 0.64
VPS28-211ENST00000530790 PLCH1Q4KWH8 1693 aa19.05■□□□□ 0.64
VPS28-211ENST00000530790 PAK3O75914 559 aaPredicted RBP19.05■□□□□ 0.64
VPS28-211ENST00000530790 UNC5CLQ8IV45 518 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms