RNA–Protein interactions for RNA: ENST00000520229.1

PDGFRB-206, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 738 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-206ENST00000520229 ABCC11Q96J66 1382 aa22.47■■□□□ 1.19
PDGFRB-206ENST00000520229 YTHDC2Q9H6S0 1430 aaKnown RBP22.47■■□□□ 1.19
PDGFRB-206ENST00000520229 KNDC1Q76NI1 1749 aa22.45■■□□□ 1.19
PDGFRB-206ENST00000520229 C1orf167Q5SNV9 1468 aa22.45■■□□□ 1.18
PDGFRB-206ENST00000520229 SPATA31A6Q5VVP1 1343 aa22.44■■□□□ 1.18
PDGFRB-206ENST00000520229 CDC42BPGQ6DT37 1551 aa22.42■■□□□ 1.18
PDGFRB-206ENST00000520229 WAPLQ7Z5K2 1190 aa22.42■■□□□ 1.18
PDGFRB-206ENST00000520229 PLEKHH1Q9ULM0 1364 aa22.38■■□□□ 1.17
PDGFRB-206ENST00000520229 ADGRB1O14514 1584 aa22.38■■□□□ 1.17
PDGFRB-206ENST00000520229 SIRT1Q96EB6 747 aa22.37■■□□□ 1.17
PDGFRB-206ENST00000520229 PNPLA6Q8IY17 1366 aa22.37■■□□□ 1.17
PDGFRB-206ENST00000520229 DDX17Q92841 729 aaKnown RBP22.36■■□□□ 1.17
PDGFRB-206ENST00000520229 SIN3AQ96ST3 1273 aa22.36■■□□□ 1.17
PDGFRB-206ENST00000520229 DLC1Q96QB1 1528 aa22.35■■□□□ 1.17
PDGFRB-206ENST00000520229 NEUROD1Q13562 356 aa22.34■■□□□ 1.17
PDGFRB-206ENST00000520229 PRAM1Q96QH2 718 aa22.34■■□□□ 1.17
PDGFRB-206ENST00000520229 COL22A1Q8NFW1 1626 aaPredicted RBP22.34■■□□□ 1.17
PDGFRB-206ENST00000520229 TRAK1Q9UPV9 953 aa22.33■■□□□ 1.17
PDGFRB-206ENST00000520229 POGKQ9P215 609 aa22.32■■□□□ 1.16
PDGFRB-206ENST00000520229 SAFB2Q14151 953 aaKnown RBP eCLIP22.31■■□□□ 1.16
PDGFRB-206ENST00000520229 FMN2Q9NZ56 1722 aa22.31■■□□□ 1.16
PDGFRB-206ENST00000520229 SOS2Q07890 1332 aaPredicted RBP22.31■■□□□ 1.16
PDGFRB-206ENST00000520229 PXDNQ92626 1479 aa22.3■■□□□ 1.16
PDGFRB-206ENST00000520229 L3MBTL2Q969R5 705 aa22.3■■□□□ 1.16
PDGFRB-206ENST00000520229 ORAI2Q96SN7 254 aa22.29■■□□□ 1.16
PDGFRB-206ENST00000520229 KIAA1210Q9ULL0 1709 aa22.28■■□□□ 1.16
PDGFRB-206ENST00000520229 NUTM2FA1L443 756 aa22.27■■□□□ 1.16
PDGFRB-206ENST00000520229 ESCO1Q5FWF5 840 aa22.26■■□□□ 1.15
PDGFRB-206ENST00000520229 LRRC59Q96AG4 307 aaKnown RBP22.25■■□□□ 1.15
PDGFRB-206ENST00000520229 CDK12Q9NYV4 1490 aaPredicted RBP22.25■■□□□ 1.15
PDGFRB-206ENST00000520229 ADGRB2O60241 1585 aa22.22■■□□□ 1.15
PDGFRB-206ENST00000520229 ZNF772Q68DY9 489 aaPredicted RBP22.22■■□□□ 1.15
PDGFRB-206ENST00000520229 MINK1Q8N4C8 1332 aaPredicted RBP22.22■■□□□ 1.15
PDGFRB-206ENST00000520229 ARHGEF28Q8N1W1 1705 aaKnown RBP22.22■■□□□ 1.15
PDGFRB-206ENST00000520229 NBPF1Q3BBV0 1214 aa22.21■■□□□ 1.15
PDGFRB-206ENST00000520229 AFF2P51816 1311 aa22.21■■□□□ 1.15
PDGFRB-206ENST00000520229 RGPD8O14715 1765 aaPredicted RBP22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 NUTM2BA6NNL0 878 aaPredicted RBP22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 NUTM2EB1AL46 878 aaPredicted RBP22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 NUTM2AQ8IVF1 878 aaPredicted RBP22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 HIRIP3Q9BW71 556 aaPredicted RBP22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 NPHP3Q7Z494 1330 aa22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 KIF1AQ12756 1690 aa22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 MARF1Q9Y4F3 1742 aaKnown RBP22.2■■□□□ 1.14
PDGFRB-206ENST00000520229 MEX3CQ5U5Q3 659 aaKnown RBP22.19■■□□□ 1.14
PDGFRB-206ENST00000520229 USP32Q8NFA0 1604 aa22.19■■□□□ 1.14
PDGFRB-206ENST00000520229 TONSLQ96HA7 1378 aa22.18■■□□□ 1.14
PDGFRB-206ENST00000520229 PCGF6Q9BYE7 350 aa22.18■■□□□ 1.14
PDGFRB-206ENST00000520229 RGS12O14924 1447 aa22.17■■□□□ 1.14
PDGFRB-206ENST00000520229 ANKARQ7Z5J8 1434 aa22.16■■□□□ 1.14
PDGFRB-206ENST00000520229 EIF3AQ14152 1382 aaKnown RBP22.16■■□□□ 1.14
PDGFRB-206ENST00000520229 FOXO3O43524 673 aa22.16■■□□□ 1.14
PDGFRB-206ENST00000520229 TRPM1Q7Z4N2 1603 aa22.15■■□□□ 1.14
PDGFRB-206ENST00000520229 WASLO00401 505 aaPredicted RBP22.14■■□□□ 1.13
PDGFRB-206ENST00000520229 PHF8Q9UPP1 1060 aa22.14■■□□□ 1.13
PDGFRB-206ENST00000520229 TULP4Q9NRJ4 1543 aa22.13■■□□□ 1.13
PDGFRB-206ENST00000520229 XPCQ01831 940 aaPredicted RBP22.13■■□□□ 1.13
PDGFRB-206ENST00000520229 ROCK2O75116 1388 aaKnown RBP22.12■■□□□ 1.13
PDGFRB-206ENST00000520229 ABCA3Q99758 1704 aa22.11■■□□□ 1.13
PDGFRB-206ENST00000520229 C8orf37Q96NL8 207 aa22.11■■□□□ 1.13
PDGFRB-206ENST00000520229 CENPJQ9HC77 1338 aaPredicted RBP22.1■■□□□ 1.13
PDGFRB-206ENST00000520229 ATRNO75882 1429 aa22.1■■□□□ 1.13
PDGFRB-206ENST00000520229 EP400Q96L91 3159 aa22.1■■□□□ 1.13
PDGFRB-206ENST00000520229 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.09■■□□□ 1.13
PDGFRB-206ENST00000520229 RXRBP28702 533 aa22.09■■□□□ 1.13
PDGFRB-206ENST00000520229 NBPF8Q3BBV2 869 aa22.09■■□□□ 1.13
PDGFRB-206ENST00000520229 FNBP4Q8N3X1 1017 aaPredicted RBP22.08■■□□□ 1.13
PDGFRB-206ENST00000520229 UPF1Q92900 1129 aaKnown RBP eCLIP22.08■■□□□ 1.13
PDGFRB-206ENST00000520229 BCL9LQ86UU0 1499 aa22.08■■□□□ 1.12
PDGFRB-206ENST00000520229 PRR36Q9H6K5 1346 aa22.07■■□□□ 1.12
PDGFRB-206ENST00000520229 TRPM3Q9HCF6 1732 aaPredicted RBP22.07■■□□□ 1.12
PDGFRB-206ENST00000520229 KRT28Q7Z3Y7 464 aa22.07■■□□□ 1.12
PDGFRB-206ENST00000520229 PMFBP1Q8TBY8 1022 aa22.07■■□□□ 1.12
PDGFRB-206ENST00000520229 ADAMTS2O95450 1211 aa22.06■■□□□ 1.12
PDGFRB-206ENST00000520229 PSME1Q06323 249 aa22.05■■□□□ 1.12
PDGFRB-206ENST00000520229 CDK19Q9BWU1 502 aa22.05■■□□□ 1.12
PDGFRB-206ENST00000520229 SPATA31A3Q5VYP0 1347 aa22.05■■□□□ 1.12
PDGFRB-206ENST00000520229 QRICH2Q9H0J4 1663 aa22.04■■□□□ 1.12
PDGFRB-206ENST00000520229 ATP7BP35670 1465 aa22.04■■□□□ 1.12
PDGFRB-206ENST00000520229 GPRASP1Q5JY77 1395 aa22.03■■□□□ 1.12
PDGFRB-206ENST00000520229 SLIT2O94813 1529 aa22.03■■□□□ 1.12
PDGFRB-206ENST00000520229 RBM6P78332 1123 aaKnown RBP22.03■■□□□ 1.12
PDGFRB-206ENST00000520229 NUDT16Q96DE0 195 aaKnown RBP22.03■■□□□ 1.12
PDGFRB-206ENST00000520229 QTRT2Q9H974 415 aaKnown RBP22.03■■□□□ 1.12
PDGFRB-206ENST00000520229 RALGAPBQ86X10 1494 aa22.03■■□□□ 1.12
PDGFRB-206ENST00000520229 TNS3Q68CZ2 1445 aa22.02■■□□□ 1.12
PDGFRB-206ENST00000520229 ITSN1Q15811 1721 aa22.02■■□□□ 1.12
PDGFRB-206ENST00000520229 ALS2Q96Q42 1657 aa22.01■■□□□ 1.11
PDGFRB-206ENST00000520229 CRYBG1Q9Y4K1 1723 aa22.01■■□□□ 1.11
PDGFRB-206ENST00000520229 SBNO1A3KN83 1393 aa22■■□□□ 1.11
PDGFRB-206ENST00000520229 SRPK2P78362 688 aaKnown RBP22■■□□□ 1.11
PDGFRB-206ENST00000520229 NGDNQ8NEJ9 315 aaKnown RBP22■■□□□ 1.11
PDGFRB-206ENST00000520229 NGLY1Q96IV0 654 aa22■■□□□ 1.11
PDGFRB-206ENST00000520229 CARD11Q9BXL7 1154 aa22■■□□□ 1.11
PDGFRB-206ENST00000520229 CLSPNQ9HAW4 1339 aa22■■□□□ 1.11
PDGFRB-206ENST00000520229 GLI3P10071 1580 aa21.99■■□□□ 1.11
PDGFRB-206ENST00000520229 PLCH1Q4KWH8 1693 aa21.98■■□□□ 1.11
PDGFRB-206ENST00000520229 LMOD2Q6P5Q4 547 aa21.97■■□□□ 1.11
PDGFRB-206ENST00000520229 USP21Q9UK80 565 aa21.97■■□□□ 1.11
PDGFRB-206ENST00000520229 CCDC61Q9Y6R9 512 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms