RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 MSL1Q68DK7 614 aa6.81□□□□□ -1.32
USP54-216ENST00000498143 CCDC18Q5T9S5 1454 aa6.81□□□□□ -1.32
USP54-216ENST00000498143 DDX54Q8TDD1 881 aaKnown RBP6.8□□□□□ -1.32
USP54-216ENST00000498143 TMEM106CQ9BVX2 250 aa6.8□□□□□ -1.32
USP54-216ENST00000498143 RNF181Q9P0P0 153 aa6.8□□□□□ -1.32
USP54-216ENST00000498143 VGFO15240 615 aaPredicted RBP6.8□□□□□ -1.32
USP54-216ENST00000498143 MAP2K1Q02750 393 aaPredicted RBP6.8□□□□□ -1.32
USP54-216ENST00000498143 MIA2Q96PC5 1412 aa6.8□□□□□ -1.32
USP54-216ENST00000498143 FYCO1Q9BQS8 1478 aa6.8□□□□□ -1.32
USP54-216ENST00000498143 PTMAP06454 111 aaKnown RBP6.8□□□□□ -1.32
USP54-216ENST00000498143 RGL3Q3MIN7 710 aa6.8□□□□□ -1.32
USP54-216ENST00000498143 TCOF1Q13428 1488 aaKnown RBP6.79□□□□□ -1.32
USP54-216ENST00000498143 RPRD2Q5VT52 1461 aaKnown RBP6.79□□□□□ -1.32
USP54-216ENST00000498143 DGKZQ13574 1117 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 BICDL1Q6ZP65 573 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 TRIM44Q96DX7 344 aaPredicted RBP6.79□□□□□ -1.32
USP54-216ENST00000498143 KLRG1Q96E93 195 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 NPATQ14207 1427 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 APPP05067 770 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 FLAD1Q8NFF5 587 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 PHF14O94880 888 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 TTLL12Q14166 644 aaPredicted RBP6.79□□□□□ -1.32
USP54-216ENST00000498143 ANP32BQ92688 251 aaKnown RBP6.79□□□□□ -1.32
USP54-216ENST00000498143 ACSBG1Q96GR2 724 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 PSMD1Q99460 953 aa6.79□□□□□ -1.32
USP54-216ENST00000498143 SLC16A10Q8TF71 515 aa6.78□□□□□ -1.32
USP54-216ENST00000498143 BIN2Q9UBW5 565 aaPredicted RBP6.78□□□□□ -1.32
USP54-216ENST00000498143 LAS1LQ9Y4W2 734 aaKnown RBP6.78□□□□□ -1.32
USP54-216ENST00000498143 ERICH3Q5RHP9 1530 aa6.78□□□□□ -1.32
USP54-216ENST00000498143 ARAP3Q8WWN8 1544 aa6.78□□□□□ -1.32
USP54-216ENST00000498143 CHRNA2Q15822 529 aa6.78□□□□□ -1.32
USP54-216ENST00000498143 VEGFAP15692 232 aaPredicted RBP6.77□□□□□ -1.32
USP54-216ENST00000498143 FGD6Q6ZV73 1430 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 PHF8Q9UPP1 1060 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 TBX22Q9Y458 520 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 PARP3Q9Y6F1 533 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 DEKP35659 375 aaKnown RBP6.77□□□□□ -1.33
USP54-216ENST00000498143 ARHGEF6Q15052 776 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 VPS72Q15906 364 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 NEUROD2Q15784 382 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 ABHD8Q96I13 439 aa6.77□□□□□ -1.33
USP54-216ENST00000498143 MYCNP04198 464 aaPredicted RBP6.76□□□□□ -1.33
USP54-216ENST00000498143 LTV1Q96GA3 475 aaPredicted RBP6.76□□□□□ -1.33
USP54-216ENST00000498143 FHOD3Q2V2M9 1422 aa6.76□□□□□ -1.33
USP54-216ENST00000498143 TCP11L2Q8N4U5 519 aa6.76□□□□□ -1.33
USP54-216ENST00000498143 ORAI2Q96SN7 254 aa6.76□□□□□ -1.33
USP54-216ENST00000498143 CCDC87Q9NVE4 849 aa6.76□□□□□ -1.33
USP54-216ENST00000498143 LOC105371045A0A1W2PR82 267 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 FGD1P98174 961 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 ABTB2Q8N961 1025 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 SPRYD3Q8NCJ5 442 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 GLI2P10070 1586 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 LTKP29376 864 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 LBX1P52954 281 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 SLC4A8Q2Y0W8 1093 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 CCDC24Q8N4L8 307 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 RRAGCQ9HB90 399 aa6.75□□□□□ -1.33
USP54-216ENST00000498143 IQGAP2Q13576 1575 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 A2ML1A8K2U0 1454 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 SLC15A2Q16348 729 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 NLRP13Q86W25 1043 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 KDM5BQ9UGL1 1544 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 BCCIPQ9P287 314 aaKnown RBP eCLIP6.74□□□□□ -1.33
USP54-216ENST00000498143 CUX1P39880 1505 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 FSTL1Q12841 308 aa6.74□□□□□ -1.33
USP54-216ENST00000498143 IDI1Q13907 227 aa6.73□□□□□ -1.33
USP54-216ENST00000498143 ECM2O94769 699 aaPredicted RBP6.73□□□□□ -1.33
USP54-216ENST00000498143 TXNRD1Q16881 649 aa6.73□□□□□ -1.33
USP54-216ENST00000498143 DPF3Q92784 378 aa6.73□□□□□ -1.33
USP54-216ENST00000498143 CDCA7Q9BWT1 371 aaPredicted RBP6.73□□□□□ -1.33
USP54-216ENST00000498143 ADAMTS12P58397 1594 aa6.73□□□□□ -1.33
USP54-216ENST00000498143 ZNF622Q969S3 477 aaKnown RBP eCLIP6.73□□□□□ -1.33
USP54-216ENST00000498143 NEFMP07197 916 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 SOX10P56693 466 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 ABCA8O94911 1581 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 JDP2Q8WYK2 163 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 IQCA1LA6NCM1 817 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 SLC34A2O95436 690 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 HTRA3P83110 453 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 NR2E3Q9Y5X4 410 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 KDM5CP41229 1560 aa6.72□□□□□ -1.33
USP54-216ENST00000498143 TARBP1Q13395 1621 aaKnown RBP6.72□□□□□ -1.33
USP54-216ENST00000498143 PARD3Q8TEW0 1356 aa6.71□□□□□ -1.33
USP54-216ENST00000498143 PATL2C9JE40 543 aaKnown RBP6.71□□□□□ -1.33
USP54-216ENST00000498143 DEFB115Q30KQ5 88 aa6.71□□□□□ -1.33
USP54-216ENST00000498143 ANKRD13DQ6ZTN6 518 aa6.71□□□□□ -1.33
USP54-216ENST00000498143 CCNL1Q9UK58 526 aaPredicted RBP6.71□□□□□ -1.33
USP54-216ENST00000498143 ADCY10Q96PN6 1610 aa6.71□□□□□ -1.34
USP54-216ENST00000498143 PPM1GO15355 546 aaPredicted RBP6.71□□□□□ -1.34
USP54-216ENST00000498143 CANXP27824 592 aaKnown RBP6.71□□□□□ -1.34
USP54-216ENST00000498143 NBPF1Q3BBV0 1214 aa6.71□□□□□ -1.34
USP54-216ENST00000498143 RBM46Q8TBY0 533 aaKnown RBP6.71□□□□□ -1.34
USP54-216ENST00000498143 KAT6BQ8WYB5 2073 aa6.71□□□□□ -1.34
USP54-216ENST00000498143 FMN1Q68DA7 1419 aa6.71□□□□□ -1.34
USP54-216ENST00000498143 PLA2R1Q13018 1463 aa6.71□□□□□ -1.34
USP54-216ENST00000498143 SCAF11Q99590 1463 aaKnown RBP6.71□□□□□ -1.34
USP54-216ENST00000498143 CLSTN1O94985 981 aa6.71□□□□□ -1.34
USP54-216ENST00000498143 SAMD1Q6SPF0 538 aaPredicted RBP6.71□□□□□ -1.34
USP54-216ENST00000498143 CWC22Q9HCG8 908 aaKnown RBP6.71□□□□□ -1.34
USP54-216ENST00000498143 PLCH2O75038 1416 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms