RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 FMN2Q9NZ56 1722 aa35.94■■■■□ 3.34
UPF3A-209ENST00000492270 JCADQ9P266 1359 aa35.94■■■■□ 3.34
UPF3A-209ENST00000492270 DLC1Q96QB1 1528 aa35.92■■■■□ 3.34
UPF3A-209ENST00000492270 TRIM26Q12899 539 aaPredicted RBP35.91■■■■□ 3.34
UPF3A-209ENST00000492270 DDX17Q92841 729 aaKnown RBP35.91■■■■□ 3.34
UPF3A-209ENST00000492270 STAC3Q96MF2 364 aa35.9■■■■□ 3.34
UPF3A-209ENST00000492270 ORAI2Q96SN7 254 aa35.9■■■■□ 3.34
UPF3A-209ENST00000492270 PHF23Q9BUL5 403 aaPredicted RBP35.88■■■■□ 3.33
UPF3A-209ENST00000492270 RGPD8O14715 1765 aaPredicted RBP35.87■■■■□ 3.33
UPF3A-209ENST00000492270 SIRT1Q96EB6 747 aa35.87■■■■□ 3.33
UPF3A-209ENST00000492270 KIAA1210Q9ULL0 1709 aa35.87■■■■□ 3.33
UPF3A-209ENST00000492270 ARHGEF28Q8N1W1 1705 aaKnown RBP35.86■■■■□ 3.33
UPF3A-209ENST00000492270 PRAM1Q96QH2 718 aa35.85■■■■□ 3.33
UPF3A-209ENST00000492270 SAFB2Q14151 953 aaKnown RBP eCLIP35.83■■■■□ 3.33
UPF3A-209ENST00000492270 SIN3AQ96ST3 1273 aa35.83■■■■□ 3.33
UPF3A-209ENST00000492270 NUTM2FA1L443 756 aa35.82■■■■□ 3.32
UPF3A-209ENST00000492270 TRAK1Q9UPV9 953 aa35.82■■■■□ 3.32
UPF3A-209ENST00000492270 LRP6O75581 1613 aa35.82■■■■□ 3.32
UPF3A-209ENST00000492270 ADGRB2O60241 1585 aa35.78■■■■□ 3.32
UPF3A-209ENST00000492270 POGKQ9P215 609 aa35.77■■■■□ 3.32
UPF3A-209ENST00000492270 ESCO1Q5FWF5 840 aa35.76■■■■□ 3.32
UPF3A-209ENST00000492270 RGS17Q9UGC6 210 aaPredicted RBP35.75■■■■□ 3.31
UPF3A-209ENST00000492270 SPATA31A6Q5VVP1 1343 aa35.75■■■■□ 3.31
UPF3A-209ENST00000492270 USP32Q8NFA0 1604 aa35.73■■■■□ 3.31
UPF3A-209ENST00000492270 KIF1AQ12756 1690 aa35.73■■■■□ 3.31
UPF3A-209ENST00000492270 NEUROD1Q13562 356 aa35.73■■■■□ 3.31
UPF3A-209ENST00000492270 L3MBTL2Q969R5 705 aa35.72■■■■□ 3.31
UPF3A-209ENST00000492270 LRRC59Q96AG4 307 aaKnown RBP35.72■■■■□ 3.31
UPF3A-209ENST00000492270 SOS2Q07890 1332 aaPredicted RBP35.71■■■■□ 3.31
UPF3A-209ENST00000492270 PNPLA6Q8IY17 1366 aa35.7■■■■□ 3.31
UPF3A-209ENST00000492270 PXDNQ92626 1479 aa35.68■■■■□ 3.3
UPF3A-209ENST00000492270 HIRIP3Q9BW71 556 aaPredicted RBP35.67■■■■□ 3.3
UPF3A-209ENST00000492270 MINK1Q8N4C8 1332 aaPredicted RBP35.66■■■■□ 3.3
UPF3A-209ENST00000492270 TRPM1Q7Z4N2 1603 aa35.66■■■■□ 3.3
UPF3A-209ENST00000492270 NBPF1Q3BBV0 1214 aa35.66■■■■□ 3.3
UPF3A-209ENST00000492270 NPHP3Q7Z494 1330 aa35.64■■■■□ 3.3
UPF3A-209ENST00000492270 NUTM2BA6NNL0 878 aaPredicted RBP35.64■■■■□ 3.3
UPF3A-209ENST00000492270 NUTM2EB1AL46 878 aaPredicted RBP35.64■■■■□ 3.3
UPF3A-209ENST00000492270 FOXO3O43524 673 aa35.64■■■■□ 3.3
UPF3A-209ENST00000492270 NUTM2AQ8IVF1 878 aaPredicted RBP35.64■■■■□ 3.3
UPF3A-209ENST00000492270 XPCQ01831 940 aaPredicted RBP35.63■■■■□ 3.29
UPF3A-209ENST00000492270 COL22A1Q8NFW1 1626 aaPredicted RBP35.61■■■■□ 3.29
UPF3A-209ENST00000492270 MEX3CQ5U5Q3 659 aaKnown RBP35.6■■■■□ 3.29
UPF3A-209ENST00000492270 ANKARQ7Z5J8 1434 aa35.57■■■■□ 3.29
UPF3A-209ENST00000492270 TULP4Q9NRJ4 1543 aa35.57■■■■□ 3.29
UPF3A-209ENST00000492270 POTEAQ6S8J7 498 aa35.57■■■■□ 3.28
UPF3A-209ENST00000492270 SOCS7O14512 581 aa35.56■■■■□ 3.28
UPF3A-209ENST00000492270 PHF8Q9UPP1 1060 aa35.55■■■■□ 3.28
UPF3A-209ENST00000492270 PRR36Q9H6K5 1346 aa35.53■■■■□ 3.28
UPF3A-209ENST00000492270 QRICH2Q9H0J4 1663 aa35.52■■■■□ 3.28
UPF3A-209ENST00000492270 ITSN1Q15811 1721 aa35.52■■■■□ 3.28
UPF3A-209ENST00000492270 WASLO00401 505 aaPredicted RBP35.52■■■■□ 3.28
UPF3A-209ENST00000492270 EIF3AQ14152 1382 aaKnown RBP35.49■■■■□ 3.27
UPF3A-209ENST00000492270 PMFBP1Q8TBY8 1022 aa35.48■■■■□ 3.27
UPF3A-209ENST00000492270 MARF1Q9Y4F3 1742 aaKnown RBP35.48■■■■□ 3.27
UPF3A-209ENST00000492270 ATP7BP35670 1465 aa35.47■■■■□ 3.27
UPF3A-209ENST00000492270 KRT28Q7Z3Y7 464 aa35.46■■■■□ 3.27
UPF3A-209ENST00000492270 TOPAZ1Q8N9V7 1692 aa35.46■■■■□ 3.27
UPF3A-209ENST00000492270 TRPM3Q9HCF6 1732 aaPredicted RBP35.45■■■■□ 3.27
UPF3A-209ENST00000492270 NBPF8Q3BBV2 869 aa35.44■■■■□ 3.26
UPF3A-209ENST00000492270 TONSLQ96HA7 1378 aa35.43■■■■□ 3.26
UPF3A-209ENST00000492270 SPATA31A3Q5VYP0 1347 aa35.43■■■■□ 3.26
UPF3A-209ENST00000492270 ADAMTS2O95450 1211 aa35.42■■■■□ 3.26
UPF3A-209ENST00000492270 C8orf37Q96NL8 207 aa35.42■■■■□ 3.26
UPF3A-209ENST00000492270 ROCK2O75116 1388 aaKnown RBP35.41■■■■□ 3.26
UPF3A-209ENST00000492270 AFF2P51816 1311 aa35.41■■■■□ 3.26
UPF3A-209ENST00000492270 CENPJQ9HC77 1338 aaPredicted RBP35.41■■■■□ 3.26
UPF3A-209ENST00000492270 TNS3Q68CZ2 1445 aa35.4■■■■□ 3.26
UPF3A-209ENST00000492270 CDK19Q9BWU1 502 aa35.39■■■■□ 3.26
UPF3A-209ENST00000492270 ABCA3Q99758 1704 aa35.39■■■■□ 3.26
UPF3A-209ENST00000492270 ZNF772Q68DY9 489 aaPredicted RBP35.38■■■■□ 3.25
UPF3A-209ENST00000492270 PSME1Q06323 249 aa35.37■■■■□ 3.25
UPF3A-209ENST00000492270 NUDT16Q96DE0 195 aaKnown RBP35.36■■■■□ 3.25
UPF3A-209ENST00000492270 ALS2Q96Q42 1657 aa35.36■■■■□ 3.25
UPF3A-209ENST00000492270 SBNO1A3KN83 1393 aa35.35■■■■□ 3.25
UPF3A-209ENST00000492270 PCGF6Q9BYE7 350 aa35.33■■■■□ 3.25
UPF3A-209ENST00000492270 GPRASP1Q5JY77 1395 aa35.31■■■■□ 3.24
UPF3A-209ENST00000492270 NGLY1Q96IV0 654 aa35.3■■■■□ 3.24
UPF3A-209ENST00000492270 RALGAPBQ86X10 1494 aa35.29■■■■□ 3.24
UPF3A-209ENST00000492270 NGDNQ8NEJ9 315 aaKnown RBP35.28■■■■□ 3.24
UPF3A-209ENST00000492270 LMOD2Q6P5Q4 547 aa35.27■■■■□ 3.24
UPF3A-209ENST00000492270 PLEKHG5O94827 1062 aa35.26■■■■□ 3.24
UPF3A-209ENST00000492270 CRYBG1Q9Y4K1 1723 aa35.25■■■■□ 3.23
UPF3A-209ENST00000492270 ARHGEF10O15013 1369 aa35.25■■■■□ 3.23
UPF3A-209ENST00000492270 SRPK2P78362 688 aaKnown RBP35.24■■■■□ 3.23
UPF3A-209ENST00000492270 CABLES1Q8TDN4 633 aa35.24■■■■□ 3.23
UPF3A-209ENST00000492270 CABP2Q9NPB3 220 aa35.23■■■■□ 3.23
UPF3A-209ENST00000492270 CCDC61Q9Y6R9 512 aa35.22■■■■□ 3.23
UPF3A-209ENST00000492270 POLR3AO14802 1390 aaPredicted RBP35.2■■■■□ 3.23
UPF3A-209ENST00000492270 PLCH1Q4KWH8 1693 aa35.19■■■■□ 3.22
UPF3A-209ENST00000492270 PPIP5K1Q6PFW1 1433 aa35.19■■■■□ 3.22
UPF3A-209ENST00000492270 FNBP4Q8N3X1 1017 aaPredicted RBP35.19■■■■□ 3.22
UPF3A-209ENST00000492270 CARD11Q9BXL7 1154 aa35.19■■■■□ 3.22
UPF3A-209ENST00000492270 QTRT2Q9H974 415 aaKnown RBP35.19■■■■□ 3.22
UPF3A-209ENST00000492270 USP21Q9UK80 565 aa35.19■■■■□ 3.22
UPF3A-209ENST00000492270 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.18■■■■□ 3.22
UPF3A-209ENST00000492270 ACEP12821 1306 aa35.18■■■■□ 3.22
UPF3A-209ENST00000492270 RXRBP28702 533 aa35.18■■■■□ 3.22
UPF3A-209ENST00000492270 PLEKHG3A1L390 1219 aa35.16■■■■□ 3.22
UPF3A-209ENST00000492270 HAP1P54257 671 aaPredicted RBP35.16■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms