RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 PLEKHH1Q9ULM0 1364 aa20.58■□□□□ 0.88
BRCA1-218ENST00000489037 MED1Q15648 1581 aaPredicted RBP20.57■□□□□ 0.88
BRCA1-218ENST00000489037 PRAM1Q96QH2 718 aa20.57■□□□□ 0.88
BRCA1-218ENST00000489037 DLC1Q96QB1 1528 aa20.57■□□□□ 0.88
BRCA1-218ENST00000489037 KIAA1210Q9ULL0 1709 aa20.56■□□□□ 0.88
BRCA1-218ENST00000489037 ADGRB1O14514 1584 aa20.56■□□□□ 0.88
BRCA1-218ENST00000489037 PHF23Q9BUL5 403 aaPredicted RBP20.56■□□□□ 0.88
BRCA1-218ENST00000489037 JCADQ9P266 1359 aa20.56■□□□□ 0.88
BRCA1-218ENST00000489037 SAFB2Q14151 953 aaKnown RBP eCLIP20.55■□□□□ 0.88
BRCA1-218ENST00000489037 L3MBTL2Q969R5 705 aa20.55■□□□□ 0.88
BRCA1-218ENST00000489037 COL16A1Q07092 1604 aaPredicted RBP20.55■□□□□ 0.88
BRCA1-218ENST00000489037 ESCO1Q5FWF5 840 aa20.53■□□□□ 0.88
BRCA1-218ENST00000489037 ORAI2Q96SN7 254 aa20.53■□□□□ 0.88
BRCA1-218ENST00000489037 NHSL1Q5SYE7 1610 aa20.53■□□□□ 0.88
BRCA1-218ENST00000489037 NUTM2FA1L443 756 aa20.52■□□□□ 0.88
BRCA1-218ENST00000489037 LRRC59Q96AG4 307 aaKnown RBP20.51■□□□□ 0.87
BRCA1-218ENST00000489037 FMN2Q9NZ56 1722 aa20.5■□□□□ 0.87
BRCA1-218ENST00000489037 DDX17Q92841 729 aaKnown RBP20.48■□□□□ 0.87
BRCA1-218ENST00000489037 SPATA31A6Q5VVP1 1343 aa20.48■□□□□ 0.87
BRCA1-218ENST00000489037 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
BRCA1-218ENST00000489037 SHPRHQ149N8 1683 aa20.47■□□□□ 0.87
BRCA1-218ENST00000489037 NPHP3Q7Z494 1330 aa20.47■□□□□ 0.87
BRCA1-218ENST00000489037 MINK1Q8N4C8 1332 aaPredicted RBP20.47■□□□□ 0.87
BRCA1-218ENST00000489037 ARHGEF28Q8N1W1 1705 aaKnown RBP20.47■□□□□ 0.87
BRCA1-218ENST00000489037 TONSLQ96HA7 1378 aa20.46■□□□□ 0.87
BRCA1-218ENST00000489037 NBPF1Q3BBV0 1214 aa20.46■□□□□ 0.87
BRCA1-218ENST00000489037 RGPD8O14715 1765 aaPredicted RBP20.45■□□□□ 0.86
BRCA1-218ENST00000489037 EIF3AQ14152 1382 aaKnown RBP20.45■□□□□ 0.86
BRCA1-218ENST00000489037 MEX3CQ5U5Q3 659 aaKnown RBP20.44■□□□□ 0.86
BRCA1-218ENST00000489037 HIRIP3Q9BW71 556 aaPredicted RBP20.44■□□□□ 0.86
BRCA1-218ENST00000489037 ADGRB2O60241 1585 aa20.43■□□□□ 0.86
BRCA1-218ENST00000489037 KIF1AQ12756 1690 aa20.43■□□□□ 0.86
BRCA1-218ENST00000489037 SOS2Q07890 1332 aaPredicted RBP20.43■□□□□ 0.86
BRCA1-218ENST00000489037 FOXO3O43524 673 aa20.42■□□□□ 0.86
BRCA1-218ENST00000489037 WASLO00401 505 aaPredicted RBP20.41■□□□□ 0.86
BRCA1-218ENST00000489037 PHF8Q9UPP1 1060 aa20.41■□□□□ 0.86
BRCA1-218ENST00000489037 ANKARQ7Z5J8 1434 aa20.41■□□□□ 0.86
BRCA1-218ENST00000489037 NUTM2BA6NNL0 878 aaPredicted RBP20.4■□□□□ 0.86
BRCA1-218ENST00000489037 NUTM2EB1AL46 878 aaPredicted RBP20.4■□□□□ 0.86
BRCA1-218ENST00000489037 TRPM1Q7Z4N2 1603 aa20.4■□□□□ 0.86
BRCA1-218ENST00000489037 NUTM2AQ8IVF1 878 aaPredicted RBP20.4■□□□□ 0.86
BRCA1-218ENST00000489037 ROCK2O75116 1388 aaKnown RBP20.39■□□□□ 0.85
BRCA1-218ENST00000489037 PNPLA6Q8IY17 1366 aa20.37■□□□□ 0.85
BRCA1-218ENST00000489037 CENPJQ9HC77 1338 aaPredicted RBP20.37■□□□□ 0.85
BRCA1-218ENST00000489037 XPCQ01831 940 aaPredicted RBP20.37■□□□□ 0.85
BRCA1-218ENST00000489037 PSME1Q06323 249 aa20.37■□□□□ 0.85
BRCA1-218ENST00000489037 ILDR2Q71H61 639 aa20.37■□□□□ 0.85
BRCA1-218ENST00000489037 KRT28Q7Z3Y7 464 aa20.36■□□□□ 0.85
BRCA1-218ENST00000489037 TULP4Q9NRJ4 1543 aa20.36■□□□□ 0.85
BRCA1-218ENST00000489037 PMFBP1Q8TBY8 1022 aa20.34■□□□□ 0.85
BRCA1-218ENST00000489037 CDK19Q9BWU1 502 aa20.34■□□□□ 0.85
BRCA1-218ENST00000489037 PXDNQ92626 1479 aa20.34■□□□□ 0.85
BRCA1-218ENST00000489037 USP32Q8NFA0 1604 aa20.34■□□□□ 0.85
BRCA1-218ENST00000489037 ITSN1Q15811 1721 aa20.33■□□□□ 0.85
BRCA1-218ENST00000489037 NBPF8Q3BBV2 869 aa20.33■□□□□ 0.85
BRCA1-218ENST00000489037 LRP6O75581 1613 aa20.33■□□□□ 0.84
BRCA1-218ENST00000489037 NUDT16Q96DE0 195 aaKnown RBP20.32■□□□□ 0.84
BRCA1-218ENST00000489037 QRICH2Q9H0J4 1663 aa20.32■□□□□ 0.84
BRCA1-218ENST00000489037 CLSPNQ9HAW4 1339 aa20.31■□□□□ 0.84
BRCA1-218ENST00000489037 NGDNQ8NEJ9 315 aaKnown RBP20.31■□□□□ 0.84
BRCA1-218ENST00000489037 GPRASP1Q5JY77 1395 aa20.31■□□□□ 0.84
BRCA1-218ENST00000489037 SRPK2P78362 688 aaKnown RBP20.3■□□□□ 0.84
BRCA1-218ENST00000489037 ZNF772Q68DY9 489 aaPredicted RBP20.3■□□□□ 0.84
BRCA1-218ENST00000489037 CARD11Q9BXL7 1154 aa20.3■□□□□ 0.84
BRCA1-218ENST00000489037 RGS17Q9UGC6 210 aaPredicted RBP20.3■□□□□ 0.84
BRCA1-218ENST00000489037 PRR36Q9H6K5 1346 aa20.29■□□□□ 0.84
BRCA1-218ENST00000489037 SPATA31A3Q5VYP0 1347 aa20.28■□□□□ 0.84
BRCA1-218ENST00000489037 COL22A1Q8NFW1 1626 aaPredicted RBP20.28■□□□□ 0.84
BRCA1-218ENST00000489037 ADAMTS2O95450 1211 aa20.28■□□□□ 0.84
BRCA1-218ENST00000489037 LMOD2Q6P5Q4 547 aa20.28■□□□□ 0.84
BRCA1-218ENST00000489037 C8orf37Q96NL8 207 aa20.27■□□□□ 0.84
BRCA1-218ENST00000489037 CCDC61Q9Y6R9 512 aa20.27■□□□□ 0.84
BRCA1-218ENST00000489037 RALGAPBQ86X10 1494 aa20.26■□□□□ 0.83
BRCA1-218ENST00000489037 SBNO1A3KN83 1393 aa20.26■□□□□ 0.83
BRCA1-218ENST00000489037 CCER1Q8TC90 406 aaPredicted RBP20.26■□□□□ 0.83
BRCA1-218ENST00000489037 EVC2Q86UK5 1308 aa20.26■□□□□ 0.83
BRCA1-218ENST00000489037 ATP7BP35670 1465 aa20.25■□□□□ 0.83
BRCA1-218ENST00000489037 HAP1P54257 671 aaPredicted RBP20.25■□□□□ 0.83
BRCA1-218ENST00000489037 NGLY1Q96IV0 654 aa20.25■□□□□ 0.83
BRCA1-218ENST00000489037 TIMELESSQ9UNS1 1208 aa20.25■□□□□ 0.83
BRCA1-218ENST00000489037 TNS3Q68CZ2 1445 aa20.25■□□□□ 0.83
BRCA1-218ENST00000489037 ARHGEF10O15013 1369 aa20.24■□□□□ 0.83
BRCA1-218ENST00000489037 POTEAQ6S8J7 498 aa20.24■□□□□ 0.83
BRCA1-218ENST00000489037 AFF2P51816 1311 aa20.24■□□□□ 0.83
BRCA1-218ENST00000489037 SOCS7O14512 581 aa20.23■□□□□ 0.83
BRCA1-218ENST00000489037 CABP2Q9NPB3 220 aa20.23■□□□□ 0.83
BRCA1-218ENST00000489037 PAK3O75914 559 aaPredicted RBP20.22■□□□□ 0.83
BRCA1-218ENST00000489037 TOPAZ1Q8N9V7 1692 aa20.2■□□□□ 0.82
BRCA1-218ENST00000489037 MARF1Q9Y4F3 1742 aaKnown RBP20.2■□□□□ 0.82
BRCA1-218ENST00000489037 PLEKHG3A1L390 1219 aa20.2■□□□□ 0.82
BRCA1-218ENST00000489037 PLEKHG5O94827 1062 aa20.19■□□□□ 0.82
BRCA1-218ENST00000489037 ACEP12821 1306 aa20.19■□□□□ 0.82
BRCA1-218ENST00000489037 TRPM3Q9HCF6 1732 aaPredicted RBP20.19■□□□□ 0.82
BRCA1-218ENST00000489037 PPIP5K1Q6PFW1 1433 aa20.19■□□□□ 0.82
BRCA1-218ENST00000489037 POLR3AO14802 1390 aaPredicted RBP20.17■□□□□ 0.82
BRCA1-218ENST00000489037 RXRBP28702 533 aa20.16■□□□□ 0.82
BRCA1-218ENST00000489037 USP21Q9UK80 565 aa20.16■□□□□ 0.82
BRCA1-218ENST00000489037 SLC24A1O60721 1099 aa20.15■□□□□ 0.82
BRCA1-218ENST00000489037 CABLES1Q8TDN4 633 aa20.15■□□□□ 0.82
BRCA1-218ENST00000489037 QTRT2Q9H974 415 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms