RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 DDX17Q92841 729 aaKnown RBP29.72■■■□□ 2.35
HDAC4-209ENST00000487617 ORAI2Q96SN7 254 aa29.72■■■□□ 2.35
HDAC4-209ENST00000487617 CDC42BPGQ6DT37 1551 aa29.71■■■□□ 2.35
HDAC4-209ENST00000487617 SPATA31A6Q5VVP1 1343 aa29.68■■■□□ 2.34
HDAC4-209ENST00000487617 NHSL1Q5SYE7 1610 aa29.67■■■□□ 2.34
HDAC4-209ENST00000487617 PRAM1Q96QH2 718 aa29.67■■■□□ 2.34
HDAC4-209ENST00000487617 ADGRB1O14514 1584 aa29.66■■■□□ 2.34
HDAC4-209ENST00000487617 ESCO1Q5FWF5 840 aa29.66■■■□□ 2.34
HDAC4-209ENST00000487617 LRRC59Q96AG4 307 aaKnown RBP29.66■■■□□ 2.34
HDAC4-209ENST00000487617 NUTM2FA1L443 756 aa29.65■■■□□ 2.34
HDAC4-209ENST00000487617 SAFB2Q14151 953 aaKnown RBP eCLIP29.65■■■□□ 2.34
HDAC4-209ENST00000487617 POGKQ9P215 609 aa29.65■■■□□ 2.34
HDAC4-209ENST00000487617 RGS17Q9UGC6 210 aaPredicted RBP29.64■■■□□ 2.34
HDAC4-209ENST00000487617 TRAK1Q9UPV9 953 aa29.64■■■□□ 2.34
HDAC4-209ENST00000487617 DLC1Q96QB1 1528 aa29.62■■■□□ 2.33
HDAC4-209ENST00000487617 SOCS7O14512 581 aa29.62■■■□□ 2.33
HDAC4-209ENST00000487617 TRIM26Q12899 539 aaPredicted RBP29.62■■■□□ 2.33
HDAC4-209ENST00000487617 SHPRHQ149N8 1683 aa29.61■■■□□ 2.33
HDAC4-209ENST00000487617 NUTM2BA6NNL0 878 aaPredicted RBP29.59■■■□□ 2.33
HDAC4-209ENST00000487617 NUTM2EB1AL46 878 aaPredicted RBP29.59■■■□□ 2.33
HDAC4-209ENST00000487617 MEX3CQ5U5Q3 659 aaKnown RBP29.59■■■□□ 2.33
HDAC4-209ENST00000487617 NUTM2AQ8IVF1 878 aaPredicted RBP29.59■■■□□ 2.33
HDAC4-209ENST00000487617 LRP6O75581 1613 aa29.59■■■□□ 2.33
HDAC4-209ENST00000487617 SOS2Q07890 1332 aaPredicted RBP29.58■■■□□ 2.33
HDAC4-209ENST00000487617 SIN3AQ96ST3 1273 aa29.57■■■□□ 2.32
HDAC4-209ENST00000487617 NPHP3Q7Z494 1330 aa29.56■■■□□ 2.32
HDAC4-209ENST00000487617 PNPLA6Q8IY17 1366 aa29.55■■■□□ 2.32
HDAC4-209ENST00000487617 FOXO3O43524 673 aa29.54■■■□□ 2.32
HDAC4-209ENST00000487617 FMN2Q9NZ56 1722 aa29.54■■■□□ 2.32
HDAC4-209ENST00000487617 NEUROD1Q13562 356 aa29.53■■■□□ 2.32
HDAC4-209ENST00000487617 POTEAQ6S8J7 498 aa29.51■■■□□ 2.31
HDAC4-209ENST00000487617 L3MBTL2Q969R5 705 aa29.51■■■□□ 2.31
HDAC4-209ENST00000487617 HIRIP3Q9BW71 556 aaPredicted RBP29.51■■■□□ 2.31
HDAC4-209ENST00000487617 MINK1Q8N4C8 1332 aaPredicted RBP29.5■■■□□ 2.31
HDAC4-209ENST00000487617 XPCQ01831 940 aaPredicted RBP29.5■■■□□ 2.31
HDAC4-209ENST00000487617 NBPF1Q3BBV0 1214 aa29.47■■■□□ 2.31
HDAC4-209ENST00000487617 PHF8Q9UPP1 1060 aa29.46■■■□□ 2.31
HDAC4-209ENST00000487617 PXDNQ92626 1479 aa29.46■■■□□ 2.31
HDAC4-209ENST00000487617 ADGRB2O60241 1585 aa29.45■■■□□ 2.31
HDAC4-209ENST00000487617 KIAA1210Q9ULL0 1709 aa29.44■■■□□ 2.3
HDAC4-209ENST00000487617 ANKARQ7Z5J8 1434 aa29.43■■■□□ 2.3
HDAC4-209ENST00000487617 KIF1AQ12756 1690 aa29.42■■■□□ 2.3
HDAC4-209ENST00000487617 WASLO00401 505 aaPredicted RBP29.42■■■□□ 2.3
HDAC4-209ENST00000487617 ZNF772Q68DY9 489 aaPredicted RBP29.42■■■□□ 2.3
HDAC4-209ENST00000487617 EIF3AQ14152 1382 aaKnown RBP29.4■■■□□ 2.3
HDAC4-209ENST00000487617 ADAMTS2O95450 1211 aa29.4■■■□□ 2.3
HDAC4-209ENST00000487617 KRT28Q7Z3Y7 464 aa29.4■■■□□ 2.3
HDAC4-209ENST00000487617 ARHGEF28Q8N1W1 1705 aaKnown RBP29.4■■■□□ 2.3
HDAC4-209ENST00000487617 C8orf37Q96NL8 207 aa29.39■■■□□ 2.3
HDAC4-209ENST00000487617 PMFBP1Q8TBY8 1022 aa29.37■■■□□ 2.29
HDAC4-209ENST00000487617 AFF2P51816 1311 aa29.37■■■□□ 2.29
HDAC4-209ENST00000487617 RGPD8O14715 1765 aaPredicted RBP29.36■■■□□ 2.29
HDAC4-209ENST00000487617 PRR36Q9H6K5 1346 aa29.36■■■□□ 2.29
HDAC4-209ENST00000487617 USP32Q8NFA0 1604 aa29.35■■■□□ 2.29
HDAC4-209ENST00000487617 PSME1Q06323 249 aa29.35■■■□□ 2.29
HDAC4-209ENST00000487617 SPATA31A3Q5VYP0 1347 aa29.35■■■□□ 2.29
HDAC4-209ENST00000487617 TULP4Q9NRJ4 1543 aa29.35■■■□□ 2.29
HDAC4-209ENST00000487617 COL22A1Q8NFW1 1626 aaPredicted RBP29.32■■■□□ 2.28
HDAC4-209ENST00000487617 NGLY1Q96IV0 654 aa29.32■■■□□ 2.28
HDAC4-209ENST00000487617 CDK19Q9BWU1 502 aa29.3■■■□□ 2.28
HDAC4-209ENST00000487617 CENPJQ9HC77 1338 aaPredicted RBP29.29■■■□□ 2.28
HDAC4-209ENST00000487617 NUDT16Q96DE0 195 aaKnown RBP29.28■■■□□ 2.28
HDAC4-209ENST00000487617 TNS3Q68CZ2 1445 aa29.28■■■□□ 2.28
HDAC4-209ENST00000487617 SBNO1A3KN83 1393 aa29.27■■■□□ 2.28
HDAC4-209ENST00000487617 ROCK2O75116 1388 aaKnown RBP29.26■■■□□ 2.28
HDAC4-209ENST00000487617 LMOD2Q6P5Q4 547 aa29.26■■■□□ 2.27
HDAC4-209ENST00000487617 NGDNQ8NEJ9 315 aaKnown RBP29.26■■■□□ 2.27
HDAC4-209ENST00000487617 GPRASP1Q5JY77 1395 aa29.26■■■□□ 2.27
HDAC4-209ENST00000487617 TONSLQ96HA7 1378 aa29.26■■■□□ 2.27
HDAC4-209ENST00000487617 RXRBP28702 533 aa29.25■■■□□ 2.27
HDAC4-209ENST00000487617 TRPM1Q7Z4N2 1603 aa29.24■■■□□ 2.27
HDAC4-209ENST00000487617 NBPF8Q3BBV2 869 aa29.24■■■□□ 2.27
HDAC4-209ENST00000487617 ATP7BP35670 1465 aa29.23■■■□□ 2.27
HDAC4-209ENST00000487617 QTRT2Q9H974 415 aaKnown RBP29.23■■■□□ 2.27
HDAC4-209ENST00000487617 PLEKHG5O94827 1062 aa29.21■■■□□ 2.27
HDAC4-209ENST00000487617 HAP1P54257 671 aaPredicted RBP29.21■■■□□ 2.27
HDAC4-209ENST00000487617 USP21Q9UK80 565 aa29.21■■■□□ 2.27
HDAC4-209ENST00000487617 ARHGEF10O15013 1369 aa29.21■■■□□ 2.27
HDAC4-209ENST00000487617 FNBP4Q8N3X1 1017 aaPredicted RBP29.2■■■□□ 2.26
HDAC4-209ENST00000487617 SRPK2P78362 688 aaKnown RBP29.19■■■□□ 2.26
HDAC4-209ENST00000487617 CCDC61Q9Y6R9 512 aa29.19■■■□□ 2.26
HDAC4-209ENST00000487617 CABLES1Q8TDN4 633 aa29.18■■■□□ 2.26
HDAC4-209ENST00000487617 ITSN1Q15811 1721 aa29.15■■■□□ 2.26
HDAC4-209ENST00000487617 PAK3O75914 559 aaPredicted RBP29.15■■■□□ 2.26
HDAC4-209ENST00000487617 RBM6P78332 1123 aaKnown RBP29.15■■■□□ 2.26
HDAC4-209ENST00000487617 CABP2Q9NPB3 220 aa29.15■■■□□ 2.26
HDAC4-209ENST00000487617 QRICH2Q9H0J4 1663 aa29.14■■■□□ 2.26
HDAC4-209ENST00000487617 TRPC5Q9UL62 973 aaPredicted RBP29.13■■■□□ 2.25
HDAC4-209ENST00000487617 TRPM3Q9HCF6 1732 aaPredicted RBP29.12■■■□□ 2.25
HDAC4-209ENST00000487617 PLEKHG3A1L390 1219 aa29.12■■■□□ 2.25
HDAC4-209ENST00000487617 ACEP12821 1306 aa29.12■■■□□ 2.25
HDAC4-209ENST00000487617 CARD11Q9BXL7 1154 aa29.11■■■□□ 2.25
HDAC4-209ENST00000487617 CDK12Q9NYV4 1490 aaPredicted RBP29.1■■■□□ 2.25
HDAC4-209ENST00000487617 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
HDAC4-209ENST00000487617 POLR3AO14802 1390 aaPredicted RBP29.1■■■□□ 2.25
HDAC4-209ENST00000487617 MARF1Q9Y4F3 1742 aaKnown RBP29.09■■■□□ 2.25
HDAC4-209ENST00000487617 EVC2Q86UK5 1308 aa29.09■■■□□ 2.25
HDAC4-209ENST00000487617 TOPAZ1Q8N9V7 1692 aa29.09■■■□□ 2.25
HDAC4-209ENST00000487617 PPIP5K1Q6PFW1 1433 aa29.08■■■□□ 2.25
HDAC4-209ENST00000487617 BCL9LQ86UU0 1499 aa29.08■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms