RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 DLC1Q96QB1 1528 aa18.76■□□□□ 0.59
CHMP3-208ENST00000486404 ADGRB1O14514 1584 aa18.76■□□□□ 0.59
CHMP3-208ENST00000486404 KIAA1210Q9ULL0 1709 aa18.74■□□□□ 0.59
CHMP3-208ENST00000486404 KIF1AQ12756 1690 aa18.74■□□□□ 0.59
CHMP3-208ENST00000486404 PLEKHH1Q9ULM0 1364 aa18.74■□□□□ 0.59
CHMP3-208ENST00000486404 WAPLQ7Z5K2 1190 aa18.73■□□□□ 0.59
CHMP3-208ENST00000486404 ARHGEF28Q8N1W1 1705 aaKnown RBP18.73■□□□□ 0.59
CHMP3-208ENST00000486404 STAC3Q96MF2 364 aa18.72■□□□□ 0.59
CHMP3-208ENST00000486404 ADGRB2O60241 1585 aa18.72■□□□□ 0.59
CHMP3-208ENST00000486404 SPATA31A6Q5VVP1 1343 aa18.72■□□□□ 0.59
CHMP3-208ENST00000486404 LRP6O75581 1613 aa18.71■□□□□ 0.58
CHMP3-208ENST00000486404 RGPD8O14715 1765 aaPredicted RBP18.7■□□□□ 0.58
CHMP3-208ENST00000486404 MEX3CQ5U5Q3 659 aaKnown RBP18.69■□□□□ 0.58
CHMP3-208ENST00000486404 PRAM1Q96QH2 718 aa18.68■□□□□ 0.58
CHMP3-208ENST00000486404 POGKQ9P215 609 aa18.68■□□□□ 0.58
CHMP3-208ENST00000486404 SAFB2Q14151 953 aaKnown RBP eCLIP18.67■□□□□ 0.58
CHMP3-208ENST00000486404 ESCO1Q5FWF5 840 aa18.67■□□□□ 0.58
CHMP3-208ENST00000486404 DDX17Q92841 729 aaKnown RBP18.67■□□□□ 0.58
CHMP3-208ENST00000486404 SIRT1Q96EB6 747 aa18.67■□□□□ 0.58
CHMP3-208ENST00000486404 ORAI2Q96SN7 254 aa18.67■□□□□ 0.58
CHMP3-208ENST00000486404 NUTM2FA1L443 756 aa18.66■□□□□ 0.58
CHMP3-208ENST00000486404 LRRC59Q96AG4 307 aaKnown RBP18.66■□□□□ 0.58
CHMP3-208ENST00000486404 TRAK1Q9UPV9 953 aa18.65■□□□□ 0.58
CHMP3-208ENST00000486404 NPHP3Q7Z494 1330 aa18.65■□□□□ 0.58
CHMP3-208ENST00000486404 PNPLA6Q8IY17 1366 aa18.65■□□□□ 0.58
CHMP3-208ENST00000486404 ITSN1Q15811 1721 aa18.64■□□□□ 0.57
CHMP3-208ENST00000486404 SOCS7O14512 581 aa18.64■□□□□ 0.57
CHMP3-208ENST00000486404 COL22A1Q8NFW1 1626 aaPredicted RBP18.63■□□□□ 0.57
CHMP3-208ENST00000486404 NUTM2BA6NNL0 878 aaPredicted RBP18.63■□□□□ 0.57
CHMP3-208ENST00000486404 NUTM2EB1AL46 878 aaPredicted RBP18.63■□□□□ 0.57
CHMP3-208ENST00000486404 TRIM26Q12899 539 aaPredicted RBP18.63■□□□□ 0.57
CHMP3-208ENST00000486404 NUTM2AQ8IVF1 878 aaPredicted RBP18.63■□□□□ 0.57
CHMP3-208ENST00000486404 PXDNQ92626 1479 aa18.63■□□□□ 0.57
CHMP3-208ENST00000486404 USP32Q8NFA0 1604 aa18.63■□□□□ 0.57
CHMP3-208ENST00000486404 EIF3AQ14152 1382 aaKnown RBP18.62■□□□□ 0.57
CHMP3-208ENST00000486404 SOS2Q07890 1332 aaPredicted RBP18.61■□□□□ 0.57
CHMP3-208ENST00000486404 ANKARQ7Z5J8 1434 aa18.6■□□□□ 0.57
CHMP3-208ENST00000486404 TRPM1Q7Z4N2 1603 aa18.6■□□□□ 0.57
CHMP3-208ENST00000486404 TULP4Q9NRJ4 1543 aa18.59■□□□□ 0.57
CHMP3-208ENST00000486404 MINK1Q8N4C8 1332 aaPredicted RBP18.59■□□□□ 0.57
CHMP3-208ENST00000486404 MARF1Q9Y4F3 1742 aaKnown RBP18.59■□□□□ 0.57
CHMP3-208ENST00000486404 QRICH2Q9H0J4 1663 aa18.58■□□□□ 0.57
CHMP3-208ENST00000486404 HIRIP3Q9BW71 556 aaPredicted RBP18.58■□□□□ 0.56
CHMP3-208ENST00000486404 RGS17Q9UGC6 210 aaPredicted RBP18.58■□□□□ 0.56
CHMP3-208ENST00000486404 FOXO3O43524 673 aa18.57■□□□□ 0.56
CHMP3-208ENST00000486404 XPCQ01831 940 aaPredicted RBP18.57■□□□□ 0.56
CHMP3-208ENST00000486404 NEUROD1Q13562 356 aa18.57■□□□□ 0.56
CHMP3-208ENST00000486404 SIN3AQ96ST3 1273 aa18.56■□□□□ 0.56
CHMP3-208ENST00000486404 ZNF772Q68DY9 489 aaPredicted RBP18.54■□□□□ 0.56
CHMP3-208ENST00000486404 L3MBTL2Q969R5 705 aa18.54■□□□□ 0.56
CHMP3-208ENST00000486404 PHF8Q9UPP1 1060 aa18.54■□□□□ 0.56
CHMP3-208ENST00000486404 POTEAQ6S8J7 498 aa18.53■□□□□ 0.56
CHMP3-208ENST00000486404 C8orf37Q96NL8 207 aa18.53■□□□□ 0.56
CHMP3-208ENST00000486404 ABCA3Q99758 1704 aa18.53■□□□□ 0.56
CHMP3-208ENST00000486404 TOPAZ1Q8N9V7 1692 aa18.53■□□□□ 0.56
CHMP3-208ENST00000486404 TNS3Q68CZ2 1445 aa18.52■□□□□ 0.56
CHMP3-208ENST00000486404 ADAMTS2O95450 1211 aa18.51■□□□□ 0.55
CHMP3-208ENST00000486404 TRPM3Q9HCF6 1732 aaPredicted RBP18.51■□□□□ 0.55
CHMP3-208ENST00000486404 ATP7BP35670 1465 aa18.51■□□□□ 0.55
CHMP3-208ENST00000486404 AFF2P51816 1311 aa18.5■□□□□ 0.55
CHMP3-208ENST00000486404 WASLO00401 505 aaPredicted RBP18.5■□□□□ 0.55
CHMP3-208ENST00000486404 TONSLQ96HA7 1378 aa18.5■□□□□ 0.55
CHMP3-208ENST00000486404 PSME1Q06323 249 aa18.49■□□□□ 0.55
CHMP3-208ENST00000486404 NBPF1Q3BBV0 1214 aa18.49■□□□□ 0.55
CHMP3-208ENST00000486404 ROCK2O75116 1388 aaKnown RBP18.49■□□□□ 0.55
CHMP3-208ENST00000486404 KRT28Q7Z3Y7 464 aa18.48■□□□□ 0.55
CHMP3-208ENST00000486404 PMFBP1Q8TBY8 1022 aa18.48■□□□□ 0.55
CHMP3-208ENST00000486404 ALS2Q96Q42 1657 aa18.47■□□□□ 0.55
CHMP3-208ENST00000486404 SPATA31A3Q5VYP0 1347 aa18.47■□□□□ 0.55
CHMP3-208ENST00000486404 CENPJQ9HC77 1338 aaPredicted RBP18.47■□□□□ 0.55
CHMP3-208ENST00000486404 SBNO1A3KN83 1393 aa18.46■□□□□ 0.55
CHMP3-208ENST00000486404 ARHGEF10O15013 1369 aa18.46■□□□□ 0.55
CHMP3-208ENST00000486404 GPRASP1Q5JY77 1395 aa18.46■□□□□ 0.55
CHMP3-208ENST00000486404 HAP1P54257 671 aaPredicted RBP18.46■□□□□ 0.55
CHMP3-208ENST00000486404 NGLY1Q96IV0 654 aa18.46■□□□□ 0.55
CHMP3-208ENST00000486404 PRR36Q9H6K5 1346 aa18.46■□□□□ 0.55
CHMP3-208ENST00000486404 LMOD2Q6P5Q4 547 aa18.45■□□□□ 0.54
CHMP3-208ENST00000486404 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.44■□□□□ 0.54
CHMP3-208ENST00000486404 PLCH1Q4KWH8 1693 aa18.44■□□□□ 0.54
CHMP3-208ENST00000486404 NGDNQ8NEJ9 315 aaKnown RBP18.43■□□□□ 0.54
CHMP3-208ENST00000486404 CDK19Q9BWU1 502 aa18.42■□□□□ 0.54
CHMP3-208ENST00000486404 PLEKHG5O94827 1062 aa18.41■□□□□ 0.54
CHMP3-208ENST00000486404 RXRBP28702 533 aa18.41■□□□□ 0.54
CHMP3-208ENST00000486404 NUDT16Q96DE0 195 aaKnown RBP18.41■□□□□ 0.54
CHMP3-208ENST00000486404 CRYBG1Q9Y4K1 1723 aa18.4■□□□□ 0.54
CHMP3-208ENST00000486404 RALGAPBQ86X10 1494 aa18.4■□□□□ 0.54
CHMP3-208ENST00000486404 CDK12Q9NYV4 1490 aaPredicted RBP18.4■□□□□ 0.54
CHMP3-208ENST00000486404 SRPK2P78362 688 aaKnown RBP18.4■□□□□ 0.54
CHMP3-208ENST00000486404 NWD2Q9ULI1 1742 aa18.4■□□□□ 0.54
CHMP3-208ENST00000486404 USP21Q9UK80 565 aa18.39■□□□□ 0.53
CHMP3-208ENST00000486404 PHRF1Q9P1Y6 1649 aaKnown RBP18.38■□□□□ 0.53
CHMP3-208ENST00000486404 PAK3O75914 559 aaPredicted RBP18.37■□□□□ 0.53
CHMP3-208ENST00000486404 QTRT2Q9H974 415 aaKnown RBP18.37■□□□□ 0.53
CHMP3-208ENST00000486404 PPIP5K1Q6PFW1 1433 aa18.37■□□□□ 0.53
CHMP3-208ENST00000486404 RGS12O14924 1447 aa18.36■□□□□ 0.53
CHMP3-208ENST00000486404 ATRNO75882 1429 aa18.35■□□□□ 0.53
CHMP3-208ENST00000486404 POLR3AO14802 1390 aaPredicted RBP18.35■□□□□ 0.53
CHMP3-208ENST00000486404 RBM6P78332 1123 aaKnown RBP18.35■□□□□ 0.53
CHMP3-208ENST00000486404 NBPF8Q3BBV2 869 aa18.35■□□□□ 0.53
CHMP3-208ENST00000486404 TRPC5Q9UL62 973 aaPredicted RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms