RNA–Protein interactions for RNA: ENST00000483407.1

CSDE1-207, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 741 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-207ENST00000483407 LOC105371045A0A1W2PR82 267 aa9.19□□□□□ -0.94
CSDE1-207ENST00000483407 KANK4Q5T7N3 995 aaPredicted RBP9.19□□□□□ -0.94
CSDE1-207ENST00000483407 ABCC3O15438 1527 aa9.19□□□□□ -0.94
CSDE1-207ENST00000483407 MAP3K1Q13233 1512 aa9.19□□□□□ -0.94
CSDE1-207ENST00000483407 MAST1Q9Y2H9 1570 aa9.19□□□□□ -0.94
CSDE1-207ENST00000483407 POLR1AO95602 1720 aaPredicted RBP9.18□□□□□ -0.94
CSDE1-207ENST00000483407 ERVK-7P63135 1459 aa9.18□□□□□ -0.94
CSDE1-207ENST00000483407 DEPDC5O75140 1603 aa9.17□□□□□ -0.94
CSDE1-207ENST00000483407 RNF17Q9BXT8 1623 aaKnown RBP9.17□□□□□ -0.94
CSDE1-207ENST00000483407 MS4A4AQ96JQ5 239 aa9.17□□□□□ -0.94
CSDE1-207ENST00000483407 ZC3H13Q5T200 1668 aaKnown RBP9.16□□□□□ -0.94
CSDE1-207ENST00000483407 EIF2AK4Q9P2K8 1649 aaKnown RBP9.16□□□□□ -0.94
CSDE1-207ENST00000483407 VWDEQ8N2E2 1590 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 DUOX2Q9NRD8 1548 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 KIF15Q9NS87 1388 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 TXNDC2Q86VQ3 553 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 ARHGEF1Q92888 912 aaKnown RBP9.16□□□□□ -0.94
CSDE1-207ENST00000483407 TMEM106CQ9BVX2 250 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 RRP7BPQ9NSQ0 103 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 EID1Q9Y6B2 187 aa9.16□□□□□ -0.94
CSDE1-207ENST00000483407 ATN1P54259 1190 aaPredicted RBP9.15□□□□□ -0.94
CSDE1-207ENST00000483407 E2F4Q16254 413 aa9.15□□□□□ -0.94
CSDE1-207ENST00000483407 SCAF11Q99590 1463 aaKnown RBP9.15□□□□□ -0.95
CSDE1-207ENST00000483407 ARHGAP31Q2M1Z3 1444 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 ERBINQ96RT1 1412 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 KANK1Q14678 1352 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 GOLGA2Q08379 1002 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 MMRN1Q13201 1228 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.14□□□□□ -0.95
CSDE1-207ENST00000483407 TRPC6Q9Y210 931 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 ABCC5O15440 1437 aa9.14□□□□□ -0.95
CSDE1-207ENST00000483407 IQGAP1P46940 1657 aa9.13□□□□□ -0.95
CSDE1-207ENST00000483407 LRRC7Q96NW7 1537 aa9.13□□□□□ -0.95
CSDE1-207ENST00000483407 MROH1Q8NDA8 1641 aa9.13□□□□□ -0.95
CSDE1-207ENST00000483407 MED1Q15648 1581 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-207ENST00000483407 PDE4AP27815 886 aa9.12□□□□□ -0.95
CSDE1-207ENST00000483407 LTKP29376 864 aa9.12□□□□□ -0.95
CSDE1-207ENST00000483407 ANKRD30AQ9BXX3 1397 aa9.12□□□□□ -0.95
CSDE1-207ENST00000483407 SLIT1O75093 1534 aa9.11□□□□□ -0.95
CSDE1-207ENST00000483407 PRDM15P57071 1507 aaPredicted RBP9.11□□□□□ -0.95
CSDE1-207ENST00000483407 ARHGAP23Q9P227 1491 aa9.11□□□□□ -0.95
CSDE1-207ENST00000483407 DAPK1P53355 1430 aa9.11□□□□□ -0.95
CSDE1-207ENST00000483407 SYNMO15061 1565 aa9.11□□□□□ -0.95
CSDE1-207ENST00000483407 TMEM2Q9UHN6 1383 aa9.11□□□□□ -0.95
CSDE1-207ENST00000483407 POTEFA5A3E0 1075 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 TIE1P35590 1138 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 MKRN3Q13064 507 aaKnown RBP9.1□□□□□ -0.95
CSDE1-207ENST00000483407 MFSD10Q14728 455 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 LMOD2Q6P5Q4 547 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 CRISPLD2Q9H0B8 497 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 CHIC2Q9UKJ5 165 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 FGD6Q6ZV73 1430 aa9.1□□□□□ -0.95
CSDE1-207ENST00000483407 PTPN23Q9H3S7 1636 aa9.09□□□□□ -0.95
CSDE1-207ENST00000483407 ALKQ9UM73 1620 aa9.09□□□□□ -0.95
CSDE1-207ENST00000483407 CEP152O94986 1710 aa9.09□□□□□ -0.95
CSDE1-207ENST00000483407 IDI1Q13907 227 aa9.09□□□□□ -0.95
CSDE1-207ENST00000483407 SPNS2Q8IVW8 549 aa9.09□□□□□ -0.95
CSDE1-207ENST00000483407 LARP6Q9BRS8 491 aaKnown RBP9.09□□□□□ -0.95
CSDE1-207ENST00000483407 UBR1Q8IWV7 1749 aa9.08□□□□□ -0.96
CSDE1-207ENST00000483407 EFCAB6Q5THR3 1501 aa9.07□□□□□ -0.96
CSDE1-207ENST00000483407 LMTK2Q8IWU2 1503 aa9.07□□□□□ -0.96
CSDE1-207ENST00000483407 TTLL13PA6NNM8 815 aa9.07□□□□□ -0.96
CSDE1-207ENST00000483407 KCNA6P17658 529 aa9.07□□□□□ -0.96
CSDE1-207ENST00000483407 SLC52A1Q9NWF4 448 aa9.07□□□□□ -0.96
CSDE1-207ENST00000483407 TULP1O00294 542 aaPredicted RBP9.06□□□□□ -0.96
CSDE1-207ENST00000483407 HDGFP51858 240 aaKnown RBP9.06□□□□□ -0.96
CSDE1-207ENST00000483407 FAM50AQ14320 339 aaKnown RBP9.06□□□□□ -0.96
CSDE1-207ENST00000483407 PROSER2Q86WR7 435 aaPredicted RBP9.06□□□□□ -0.96
CSDE1-207ENST00000483407 ARIH1Q9Y4X5 557 aaPredicted RBP9.06□□□□□ -0.96
CSDE1-207ENST00000483407 TMEM94Q12767 1356 aa9.06□□□□□ -0.96
CSDE1-207ENST00000483407 FAM135BQ49AJ0 1406 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 STRCP1A6NGW2 1772 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 CROCC2H7BZ55 1655 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 TESPA1A2RU30 521 aaPredicted RBP9.05□□□□□ -0.96
CSDE1-207ENST00000483407 ST18O60284 1047 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 DDX27Q96GQ7 796 aaKnown RBP9.05□□□□□ -0.96
CSDE1-207ENST00000483407 SLC26A8Q96RN1 970 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 PIK3C2BO00750 1634 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 NOS1P29475 1434 aa9.05□□□□□ -0.96
CSDE1-207ENST00000483407 SEMA3EO15041 775 aa9.04□□□□□ -0.96
CSDE1-207ENST00000483407 SEC24BO95487 1268 aa9.04□□□□□ -0.96
CSDE1-207ENST00000483407 BMP2KQ9NSY1 1161 aaPredicted RBP9.04□□□□□ -0.96
CSDE1-207ENST00000483407 ANKRD50Q9ULJ7 1429 aa9.04□□□□□ -0.96
CSDE1-207ENST00000483407 ADGRL2O95490 1459 aa9.03□□□□□ -0.96
CSDE1-207ENST00000483407 PPP1R15AO75807 674 aaPredicted RBP9.03□□□□□ -0.96
CSDE1-207ENST00000483407 CAMK2BQ13554 666 aa9.03□□□□□ -0.96
CSDE1-207ENST00000483407 CFAP65Q6ZU64 1925 aaKnown RBP9.03□□□□□ -0.96
CSDE1-207ENST00000483407 RPRD2Q5VT52 1461 aaKnown RBP9.02□□□□□ -0.96
CSDE1-207ENST00000483407 MSH6P52701 1360 aa9.02□□□□□ -0.97
CSDE1-207ENST00000483407 ADGRB3O60242 1522 aa9.02□□□□□ -0.97
CSDE1-207ENST00000483407 KDM5AP29375 1690 aaKnown RBP9.02□□□□□ -0.97
CSDE1-207ENST00000483407 RBM33Q96EV2 1170 aaKnown RBP9.02□□□□□ -0.97
CSDE1-207ENST00000483407 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.02□□□□□ -0.97
CSDE1-207ENST00000483407 NKTRP30414 1462 aaKnown RBP9.02□□□□□ -0.97
CSDE1-207ENST00000483407 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.01□□□□□ -0.97
CSDE1-207ENST00000483407 TMEM121BQ9BXQ6 578 aaPredicted RBP9.01□□□□□ -0.97
CSDE1-207ENST00000483407 TET3O43151 1660 aa9□□□□□ -0.97
CSDE1-207ENST00000483407 PLEKHG1Q9ULL1 1385 aa9□□□□□ -0.97
CSDE1-207ENST00000483407 RGS17Q9UGC6 210 aaPredicted RBP9□□□□□ -0.97
CSDE1-207ENST00000483407 TRIM35Q9UPQ4 493 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms