RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 CDC42BPGQ6DT37 1551 aa34.25■■■■□ 3.07
VARS-217ENST00000440048 C1orf167Q5SNV9 1468 aa34.25■■■■□ 3.07
VARS-217ENST00000440048 COL16A1Q07092 1604 aaPredicted RBP34.23■■■■□ 3.07
VARS-217ENST00000440048 DLC1Q96QB1 1528 aa34.22■■■■□ 3.07
VARS-217ENST00000440048 NEUROD1Q13562 356 aa34.22■■■■□ 3.07
VARS-217ENST00000440048 SOCS7O14512 581 aa34.21■■■■□ 3.07
VARS-217ENST00000440048 L3MBTL2Q969R5 705 aa34.19■■■■□ 3.06
VARS-217ENST00000440048 PRAM1Q96QH2 718 aa34.19■■■■□ 3.06
VARS-217ENST00000440048 TRAK1Q9UPV9 953 aa34.18■■■■□ 3.06
VARS-217ENST00000440048 NHSL1Q5SYE7 1610 aa34.18■■■■□ 3.06
VARS-217ENST00000440048 KIAA1210Q9ULL0 1709 aa34.18■■■■□ 3.06
VARS-217ENST00000440048 JCADQ9P266 1359 aa34.15■■■■□ 3.06
VARS-217ENST00000440048 SAFB2Q14151 953 aaKnown RBP eCLIP34.15■■■■□ 3.06
VARS-217ENST00000440048 ORAI2Q96SN7 254 aa34.15■■■■□ 3.06
VARS-217ENST00000440048 POGKQ9P215 609 aa34.15■■■■□ 3.06
VARS-217ENST00000440048 FMN2Q9NZ56 1722 aa34.12■■■■□ 3.05
VARS-217ENST00000440048 DDX17Q92841 729 aaKnown RBP34.11■■■■□ 3.05
VARS-217ENST00000440048 NUTM2FA1L443 756 aa34.09■■■■□ 3.05
VARS-217ENST00000440048 ARHGEF28Q8N1W1 1705 aaKnown RBP34.07■■■■□ 3.05
VARS-217ENST00000440048 NBPF1Q3BBV0 1214 aa34.07■■■■□ 3.04
VARS-217ENST00000440048 ESCO1Q5FWF5 840 aa34.06■■■■□ 3.04
VARS-217ENST00000440048 SHPRHQ149N8 1683 aa34.04■■■■□ 3.04
VARS-217ENST00000440048 ADGRB2O60241 1585 aa34.03■■■■□ 3.04
VARS-217ENST00000440048 PCGF6Q9BYE7 350 aa34.01■■■■□ 3.03
VARS-217ENST00000440048 SPATA31A6Q5VVP1 1343 aa34.01■■■■□ 3.03
VARS-217ENST00000440048 MINK1Q8N4C8 1332 aaPredicted RBP34.01■■■■□ 3.03
VARS-217ENST00000440048 RGPD8O14715 1765 aaPredicted RBP34■■■■□ 3.03
VARS-217ENST00000440048 LRRC59Q96AG4 307 aaKnown RBP34■■■■□ 3.03
VARS-217ENST00000440048 HIRIP3Q9BW71 556 aaPredicted RBP33.99■■■■□ 3.03
VARS-217ENST00000440048 SOS2Q07890 1332 aaPredicted RBP33.98■■■■□ 3.03
VARS-217ENST00000440048 TRPM1Q7Z4N2 1603 aa33.97■■■■□ 3.03
VARS-217ENST00000440048 RGS17Q9UGC6 210 aaPredicted RBP33.96■■■■□ 3.03
VARS-217ENST00000440048 NPHP3Q7Z494 1330 aa33.95■■■■□ 3.03
VARS-217ENST00000440048 FOXO3O43524 673 aa33.94■■■■□ 3.02
VARS-217ENST00000440048 KIF1AQ12756 1690 aa33.93■■■■□ 3.02
VARS-217ENST00000440048 TONSLQ96HA7 1378 aa33.93■■■■□ 3.02
VARS-217ENST00000440048 USP32Q8NFA0 1604 aa33.92■■■■□ 3.02
VARS-217ENST00000440048 LRP6O75581 1613 aa33.91■■■■□ 3.02
VARS-217ENST00000440048 ANKARQ7Z5J8 1434 aa33.91■■■■□ 3.02
VARS-217ENST00000440048 PXDNQ92626 1479 aa33.9■■■■□ 3.02
VARS-217ENST00000440048 PNPLA6Q8IY17 1366 aa33.9■■■■□ 3.02
VARS-217ENST00000440048 WASLO00401 505 aaPredicted RBP33.9■■■■□ 3.02
VARS-217ENST00000440048 NBPF8Q3BBV2 869 aa33.9■■■■□ 3.02
VARS-217ENST00000440048 PHF8Q9UPP1 1060 aa33.88■■■■□ 3.01
VARS-217ENST00000440048 EIF3AQ14152 1382 aaKnown RBP33.87■■■■□ 3.01
VARS-217ENST00000440048 XPCQ01831 940 aaPredicted RBP33.87■■■■□ 3.01
VARS-217ENST00000440048 TULP4Q9NRJ4 1543 aa33.86■■■■□ 3.01
VARS-217ENST00000440048 NUTM2BA6NNL0 878 aaPredicted RBP33.85■■■■□ 3.01
VARS-217ENST00000440048 NUTM2EB1AL46 878 aaPredicted RBP33.85■■■■□ 3.01
VARS-217ENST00000440048 MEX3CQ5U5Q3 659 aaKnown RBP33.85■■■■□ 3.01
VARS-217ENST00000440048 NUTM2AQ8IVF1 878 aaPredicted RBP33.85■■■■□ 3.01
VARS-217ENST00000440048 ROCK2O75116 1388 aaKnown RBP33.85■■■■□ 3.01
VARS-217ENST00000440048 PRR36Q9H6K5 1346 aa33.84■■■■□ 3.01
VARS-217ENST00000440048 CENPJQ9HC77 1338 aaPredicted RBP33.82■■■■□ 3.01
VARS-217ENST00000440048 POTEAQ6S8J7 498 aa33.8■■■■□ 3
VARS-217ENST00000440048 KRT28Q7Z3Y7 464 aa33.79■■■■□ 3
VARS-217ENST00000440048 PMFBP1Q8TBY8 1022 aa33.79■■■■□ 3
VARS-217ENST00000440048 QRICH2Q9H0J4 1663 aa33.78■■■■□ 3
VARS-217ENST00000440048 CDK19Q9BWU1 502 aa33.78■■■■□ 3
VARS-217ENST00000440048 GPRASP1Q5JY77 1395 aa33.77■■■■□ 3
VARS-217ENST00000440048 COL22A1Q8NFW1 1626 aaPredicted RBP33.77■■■■□ 3
VARS-217ENST00000440048 ATP7BP35670 1465 aa33.76■■■□□ 2.99
VARS-217ENST00000440048 ZNF772Q68DY9 489 aaPredicted RBP33.75■■■□□ 2.99
VARS-217ENST00000440048 NUDT16Q96DE0 195 aaKnown RBP33.75■■■□□ 2.99
VARS-217ENST00000440048 ITSN1Q15811 1721 aa33.73■■■□□ 2.99
VARS-217ENST00000440048 RALGAPBQ86X10 1494 aa33.73■■■□□ 2.99
VARS-217ENST00000440048 SPATA31A3Q5VYP0 1347 aa33.73■■■□□ 2.99
VARS-217ENST00000440048 PSME1Q06323 249 aa33.72■■■□□ 2.99
VARS-217ENST00000440048 CLSPNQ9HAW4 1339 aa33.71■■■□□ 2.99
VARS-217ENST00000440048 CARD11Q9BXL7 1154 aa33.68■■■□□ 2.98
VARS-217ENST00000440048 SBNO1A3KN83 1393 aa33.68■■■□□ 2.98
VARS-217ENST00000440048 TNS3Q68CZ2 1445 aa33.67■■■□□ 2.98
VARS-217ENST00000440048 TOPAZ1Q8N9V7 1692 aa33.67■■■□□ 2.98
VARS-217ENST00000440048 ADAMTS2O95450 1211 aa33.66■■■□□ 2.98
VARS-217ENST00000440048 NGDNQ8NEJ9 315 aaKnown RBP33.65■■■□□ 2.98
VARS-217ENST00000440048 SRPK2P78362 688 aaKnown RBP33.64■■■□□ 2.98
VARS-217ENST00000440048 CCDC61Q9Y6R9 512 aa33.64■■■□□ 2.98
VARS-217ENST00000440048 TRPM3Q9HCF6 1732 aaPredicted RBP33.64■■■□□ 2.98
VARS-217ENST00000440048 C8orf37Q96NL8 207 aa33.63■■■□□ 2.97
VARS-217ENST00000440048 CABP2Q9NPB3 220 aa33.62■■■□□ 2.97
VARS-217ENST00000440048 AFF2P51816 1311 aa33.61■■■□□ 2.97
VARS-217ENST00000440048 EVC2Q86UK5 1308 aa33.58■■■□□ 2.97
VARS-217ENST00000440048 PLEKHG3A1L390 1219 aa33.58■■■□□ 2.97
VARS-217ENST00000440048 LMOD2Q6P5Q4 547 aa33.58■■■□□ 2.97
VARS-217ENST00000440048 ARHGEF10O15013 1369 aa33.58■■■□□ 2.97
VARS-217ENST00000440048 MARF1Q9Y4F3 1742 aaKnown RBP33.57■■■□□ 2.96
VARS-217ENST00000440048 CCER1Q8TC90 406 aaPredicted RBP33.57■■■□□ 2.96
VARS-217ENST00000440048 NGLY1Q96IV0 654 aa33.57■■■□□ 2.96
VARS-217ENST00000440048 ALS2Q96Q42 1657 aa33.56■■■□□ 2.96
VARS-217ENST00000440048 TIMELESSQ9UNS1 1208 aa33.56■■■□□ 2.96
VARS-217ENST00000440048 POLR3AO14802 1390 aaPredicted RBP33.56■■■□□ 2.96
VARS-217ENST00000440048 ACEP12821 1306 aa33.55■■■□□ 2.96
VARS-217ENST00000440048 PPIP5K1Q6PFW1 1433 aa33.54■■■□□ 2.96
VARS-217ENST00000440048 RXRBP28702 533 aa33.53■■■□□ 2.96
VARS-217ENST00000440048 SBNO2Q9Y2G9 1366 aa33.52■■■□□ 2.96
VARS-217ENST00000440048 CABLES1Q8TDN4 633 aa33.52■■■□□ 2.96
VARS-217ENST00000440048 PAK3O75914 559 aaPredicted RBP33.51■■■□□ 2.95
VARS-217ENST00000440048 ABCA3Q99758 1704 aa33.5■■■□□ 2.95
VARS-217ENST00000440048 PLEKHG5O94827 1062 aa33.5■■■□□ 2.95
VARS-217ENST00000440048 HAP1P54257 671 aaPredicted RBP33.47■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms