RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 TRMT2AQ8IZ69 625 aaKnown RBP11.3□□□□□ -0.6
COPB1-202ENST00000439561 GPRASP1Q5JY77 1395 aa11.3□□□□□ -0.6
COPB1-202ENST00000439561 IPO8O15397 1037 aaKnown RBP11.3□□□□□ -0.6
COPB1-202ENST00000439561 NINLQ9Y2I6 1382 aa11.29□□□□□ -0.6
COPB1-202ENST00000439561 RRP9O43818 475 aaKnown RBP11.29□□□□□ -0.6
COPB1-202ENST00000439561 SLC24A1O60721 1099 aa11.29□□□□□ -0.6
COPB1-202ENST00000439561 DNTTIP2Q5QJE6 756 aaKnown RBP11.29□□□□□ -0.6
COPB1-202ENST00000439561 ASXL1Q8IXJ9 1541 aa11.29□□□□□ -0.6
COPB1-202ENST00000439561 ADGBQ8N7X0 1667 aa11.29□□□□□ -0.6
COPB1-202ENST00000439561 ATP10BO94823 1461 aa11.29□□□□□ -0.6
COPB1-202ENST00000439561 CALD1Q05682 793 aaKnown RBP11.29□□□□□ -0.6
COPB1-202ENST00000439561 KIAA1211Q6ZU35 1233 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 TMEM57Q8N5G2 664 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 TRIM27P14373 513 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 MCTP1Q6DN14 999 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 SSH1Q8WYL5 1049 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 KANK1Q14678 1352 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 WDR63Q8IWG1 891 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 INSRP06213 1382 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 KDM5DQ9BY66 1539 aa11.28□□□□□ -0.6
COPB1-202ENST00000439561 RIPK4P57078 832 aa11.27□□□□□ -0.6
COPB1-202ENST00000439561 GGNBP2Q9H3C7 697 aa11.27□□□□□ -0.6
COPB1-202ENST00000439561 R3HCC1Q9Y3T6 440 aaKnown RBP11.27□□□□□ -0.6
COPB1-202ENST00000439561 NSD3Q9BZ95 1437 aa11.27□□□□□ -0.6
COPB1-202ENST00000439561 MRC2Q9UBG0 1479 aa11.27□□□□□ -0.6
COPB1-202ENST00000439561 PIK3C2GO75747 1445 aa11.27□□□□□ -0.61
COPB1-202ENST00000439561 AAMPQ13685 434 aa11.27□□□□□ -0.61
COPB1-202ENST00000439561 SKOR2Q2VWA4 1001 aaPredicted RBP11.27□□□□□ -0.61
COPB1-202ENST00000439561 FOXD4L6Q3SYB3 417 aaPredicted RBP11.27□□□□□ -0.61
COPB1-202ENST00000439561 CAVIN1Q6NZI2 390 aaKnown RBP11.27□□□□□ -0.61
COPB1-202ENST00000439561 FOXD4L3Q6VB84 417 aaPredicted RBP11.27□□□□□ -0.61
COPB1-202ENST00000439561 ADGRF5Q8IZF2 1346 aa11.27□□□□□ -0.61
COPB1-202ENST00000439561 GGT6Q6P531 493 aa11.27□□□□□ -0.61
COPB1-202ENST00000439561 ATF7IPQ6VMQ6 1270 aa11.27□□□□□ -0.61
COPB1-202ENST00000439561 RBM42Q9BTD8 480 aaKnown RBP11.27□□□□□ -0.61
COPB1-202ENST00000439561 SYNJ2O15056 1496 aa11.26□□□□□ -0.61
COPB1-202ENST00000439561 SSFA2P28290 1259 aa11.26□□□□□ -0.61
COPB1-202ENST00000439561 NOL8Q76FK4 1167 aaKnown RBP11.26□□□□□ -0.61
COPB1-202ENST00000439561 PBRM1Q86U86 1689 aa11.26□□□□□ -0.61
COPB1-202ENST00000439561 WDR7Q9Y4E6 1490 aa11.26□□□□□ -0.61
COPB1-202ENST00000439561 CEP170Q5SW79 1584 aa11.26□□□□□ -0.61
COPB1-202ENST00000439561 IFT140Q96RY7 1462 aa11.26□□□□□ -0.61
COPB1-202ENST00000439561 SCAF11Q99590 1463 aaKnown RBP11.26□□□□□ -0.61
COPB1-202ENST00000439561 PLA2R1Q13018 1463 aa11.25□□□□□ -0.61
COPB1-202ENST00000439561 TARBP1Q13395 1621 aaKnown RBP11.25□□□□□ -0.61
COPB1-202ENST00000439561 FSD2A1L4K1 749 aa11.25□□□□□ -0.61
COPB1-202ENST00000439561 CABP2Q9NPB3 220 aa11.25□□□□□ -0.61
COPB1-202ENST00000439561 PLCB2Q00722 1185 aa11.25□□□□□ -0.61
COPB1-202ENST00000439561 SHANK2Q9UPX8 1470 aa11.24□□□□□ -0.61
COPB1-202ENST00000439561 GAS2L3Q86XJ1 694 aa11.24□□□□□ -0.61
COPB1-202ENST00000439561 CHD1LQ86WJ1 897 aa11.24□□□□□ -0.61
COPB1-202ENST00000439561 SYCP2Q9BX26 1530 aa11.23□□□□□ -0.61
COPB1-202ENST00000439561 MPNDQ8N594 471 aa11.23□□□□□ -0.61
COPB1-202ENST00000439561 RNF214Q8ND24 703 aa11.23□□□□□ -0.61
COPB1-202ENST00000439561 ERBB4Q15303 1308 aa11.23□□□□□ -0.61
COPB1-202ENST00000439561 K7ELQ4 463 aaPredicted RBP11.23□□□□□ -0.61
COPB1-202ENST00000439561 PTMSP20962 102 aa11.22□□□□□ -0.61
COPB1-202ENST00000439561 TRPM1Q7Z4N2 1603 aa11.22□□□□□ -0.61
COPB1-202ENST00000439561 CCDC173Q0VFZ6 552 aa11.22□□□□□ -0.61
COPB1-202ENST00000439561 TPM2P07951 284 aa11.21□□□□□ -0.61
COPB1-202ENST00000439561 TMPOP42166 694 aaKnown RBP11.21□□□□□ -0.62
COPB1-202ENST00000439561 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.21□□□□□ -0.62
COPB1-202ENST00000439561 THUMPD2Q9BTF0 503 aaKnown RBP11.21□□□□□ -0.62
COPB1-202ENST00000439561 NUP160Q12769 1436 aa11.21□□□□□ -0.62
COPB1-202ENST00000439561 PRPF40AO75400 957 aaKnown RBP11.2□□□□□ -0.62
COPB1-202ENST00000439561 HMOX1P09601 288 aa11.2□□□□□ -0.62
COPB1-202ENST00000439561 CASC1Q6TDU7 716 aa11.2□□□□□ -0.62
COPB1-202ENST00000439561 KIF16BQ96L93 1317 aa11.2□□□□□ -0.62
COPB1-202ENST00000439561 PRDM15P57071 1507 aaPredicted RBP11.2□□□□□ -0.62
COPB1-202ENST00000439561 XPCQ01831 940 aaPredicted RBP11.2□□□□□ -0.62
COPB1-202ENST00000439561 ZSCAN30Q86W11 494 aa11.2□□□□□ -0.62
COPB1-202ENST00000439561 EIF4G3O43432 1585 aaKnown RBP11.2□□□□□ -0.62
COPB1-202ENST00000439561 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.2□□□□□ -0.62
COPB1-202ENST00000439561 ISY1Q9ULR0 285 aaKnown RBP11.2□□□□□ -0.62
COPB1-202ENST00000439561 E9PCH4 1651 aa11.19□□□□□ -0.62
COPB1-202ENST00000439561 GAS2L2Q8NHY3 880 aa11.19□□□□□ -0.62
COPB1-202ENST00000439561 SCAPERQ9BY12 1400 aa11.19□□□□□ -0.62
COPB1-202ENST00000439561 TBC1D9Q6ZT07 1266 aa11.19□□□□□ -0.62
COPB1-202ENST00000439561 CIZ1Q9ULV3 898 aaPredicted RBP11.19□□□□□ -0.62
COPB1-202ENST00000439561 MINK1Q8N4C8 1332 aaPredicted RBP11.19□□□□□ -0.62
COPB1-202ENST00000439561 ABCC10Q5T3U5 1492 aa11.18□□□□□ -0.62
COPB1-202ENST00000439561 POLR3AO14802 1390 aaPredicted RBP11.18□□□□□ -0.62
COPB1-202ENST00000439561 EIF2AK4Q9P2K8 1649 aaKnown RBP11.18□□□□□ -0.62
COPB1-202ENST00000439561 CD2BP2O95400 341 aaKnown RBP11.18□□□□□ -0.62
COPB1-202ENST00000439561 HDAC1Q13547 482 aaPredicted RBP11.18□□□□□ -0.62
COPB1-202ENST00000439561 EVC2Q86UK5 1308 aa11.18□□□□□ -0.62
COPB1-202ENST00000439561 DIAPH1O60610 1272 aaKnown RBP11.17□□□□□ -0.62
COPB1-202ENST00000439561 STAC3Q96MF2 364 aa11.17□□□□□ -0.62
COPB1-202ENST00000439561 CHMP4BQ9H444 224 aaKnown RBP11.17□□□□□ -0.62
COPB1-202ENST00000439561 STAG3Q9UJ98 1225 aa11.17□□□□□ -0.62
COPB1-202ENST00000439561 CDC45O75419 566 aa11.17□□□□□ -0.62
COPB1-202ENST00000439561 BAG4O95429 457 aaKnown RBP11.17□□□□□ -0.62
COPB1-202ENST00000439561 RAB3GAP1Q15042 981 aa11.17□□□□□ -0.62
COPB1-202ENST00000439561 RBM27Q9P2N5 1060 aaKnown RBP11.17□□□□□ -0.62
COPB1-202ENST00000439561 NUCB1Q02818 461 aa11.16□□□□□ -0.62
COPB1-202ENST00000439561 SMC5Q8IY18 1101 aa11.16□□□□□ -0.62
COPB1-202ENST00000439561 ST18O60284 1047 aa11.16□□□□□ -0.62
COPB1-202ENST00000439561 FBLN1P23142 703 aa11.16□□□□□ -0.62
COPB1-202ENST00000439561 PRKAR2BP31323 418 aa11.16□□□□□ -0.62
COPB1-202ENST00000439561 UQCRHLA0A096LP55 91 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms